General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000507785
Gene ID:	ENSG00000120149
Gene Name:	MSX2
Sequence (UNICHARACTER ENCODING)	GCCGCUGCCGGGUUGCCAGCGGAGUCGCGCGUCGGGAGCUACGUAGGGCAGAGAAGUCAUGGCUUCUCCGUCCAAAGGCAAUGACUUGUUUUCGCCCGACGAGGAGGGCCCAGCAGUGGUGGCCGGACCAGGCCCGGGGCCUGGGGGCGCCGAGGGGGCCGCGGAGGAGCGCCGCGUCAAGGUCUCCAGCCUGCCCUUCAGCGUGGAGGCGCUCAUGUCCGACAAGAAGCCGCCCAAGGAGGCGUCCCCGCUGCCGGCCGAAAGCGCCUCGGCCGGGGCCACCCUGCGGCCACUGCUGCUGUCGGGGCACGGCGCUCGGGAAGCGCACAGCCCCGGGCCGCUGGUGAAGCCCUUCGAGACCGCCUCGGUCAAGUCGGAAAAUUCAGAAGAUGGAGCGGCGUGGAUGCAGGAACCCGGCCGAUAUUCGCCGCCGCCAAGUGAGUGCGCGCCGGGGCAGGAGUAGGAGGACAUAUGAGCCCUACCACCUGCACCCUGAGGAAACACAAGACCAAUCGGAAGCCGCGCACGCCCUPUACCACAPCCCAGCUCCUCGCCCUGGAGCGCAAGUUCCGUCAGAAACAGUACCUCUCCAUUGCAGAGCGUGCAGAGUUCUCCAGCUCUCUGAACCUCACAGAGACCCAGGUCAAAAUCUGGUUCCAGAЖCCGAAGGGCCAAGGCGAAAAGACUGCAGGAGGCAGAЖCUGGAAAAGCUGAAAAUGGCUGCAAAACCUAUGCUGCCCUCCAGCUUCAGUCUCCCUUUCCCCAUCAGCUCGCCCCUGCAGGCAGCGUCCAUAUAUGGAGCAPCCUACCCGUUCCAUAGЖCCUGUGCUUCCCAPCCCGCCUGUGGGЖCUCUAUGCCACGCCAGUGGGAUAUGGCAUGUACCACCUGUCCUAAGGAAGACCAGAUCAAUAGЖCUCCAUGAUGGAUGCUUGUUUCAAAGGGUUUCCUCUCCCUCUCCACGAAGGCAGUACCAGCCAGUACUCCUGCUCUGCUAACCCUGCGUGCACCACCCUAAGCGGCUAGGCUGACAGGGCCACACGACAUAGCUGAAAUUUGUUCUGUAGGCGGAGGCACCAAGCCCUGUUUUCUUGGUGUAAUCUUCCAGAUGCCCCCUUUUCCUUUCACAAAGAUUGGCUCUGAUGGUUUUUAUGUAUAAAUAUAUAUAUAUAAUAAAAUAUAAUACAUUUUUAUA
Sequence (SHORT NAMES ENCODING)	GCCGCUGCCGGGUUGCCAGCGGAGUCGCGCGUCGGGAGCUACGUAGGGCAGAGAAGUCAUGGCUUCUCCGUCCAAAGGCAAUGACUUGUUUUCGCCCGACGAGGAGGGCCCAGCAGUGGUGGCCGGACCAGGCCCGGGGCCUGGGGGCGCCGAGGGGGCCGCGGAGGAGCGCCGCGUCAAGGUCUCCAGCCUGCCCUUCAGCGUGGAGGCGCUCAUGUCCGACAAGAAGCCGCCCAAGGAGGCGUCCCCGCUGCCGGCCGAAAGCGCCUCGGCCGGGGCCACCCUGCGGCCACUGCUGCUGUCGGGGCACGGCGCUCGGGAAGCGCACAGCCCCGGGCCGCUGGUGAAGCCCUUCGAGACCGCCUCGGUCAAGUCGGAAAAUUCAGAAGAUGGAGCGGCGUGGAUGCAGGAACCCGGCCGAUAUUCGCCGCCGCCAAGUGAGUGCGCGCCGGGGCAGGAGUAGGAGGACAUAUGAGCCCUACCACCUGCACCCUGAGGAAACACAAGACCAAUCGGAAGCCGCGCACGCCCUYUACCACAYCCCAGCUCCUCGCCCUGGAGCGCAAGUUCCGUCAGAAACAGUACCUCUCCAUUGCAGAGCGUGCAGAGUUCUCCAGCUCUCUGAACCUCACAGAGACCCAGGUCAAAAUCUGGUUCCAGAm6ACCGAAGGGCCAAGGCGAAAAGACUGCAGGAGGCAGAm6ACUGGAAAAGCUGAAAAUGGCUGCAAAACCUAUGCUGCCCUCCAGCUUCAGUCUCCCUUUCCCCAUCAGCUCGCCCCUGCAGGCAGCGUCCAUAUAUGGAGCAYCCUACCCGUUCCAUAGm6ACCUGUGCUUCCCAYCCCGCCUGUGGGm6ACUCUAUGCCACGCCAGUGGGAUAUGGCAUGUACCACCUGUCCUAAGGAAGACCAGAUCAAUAGm6ACUCCAUGAUGGAUGCUUGUUUCAAAGGGUUUCCUCUCCCUCUCCACGAAGGCAGUACCAGCCAGUACUCCUGCUCUGCUAACCCUGCGUGCACCACCCUAAGCGGCUAGGCUGACAGGGCCACACGACAUAGCUGAAAUUUGUUCUGUAGGCGGAGGCACCAAGCCCUGUUUUCUUGGUGUAAUCUUCCAGAUGCCCCCUUUUCCUUUCACAAAGAUUGGCUCUGAUGGUUUUUAUGUAUAAAUAUAUAUAUAUAAUAAAAUAUAAUACAUUUUUAUA
Sequence (MODOMICS CODE ENCODING)	GCCGCUGCCGGGUUGCCAGCGGAGUCGCGCGUCGGGAGCUACGUAGGGCAGAGAAGUCAUGGCUUCUCCGUCCAAAGGCAAUGACUUGUUUUCGCCCGACGAGGAGGGCCCAGCAGUGGUGGCCGGACCAGGCCCGGGGCCUGGGGGCGCCGAGGGGGCCGCGGAGGAGCGCCGCGUCAAGGUCUCCAGCCUGCCCUUCAGCGUGGAGGCGCUCAUGUCCGACAAGAAGCCGCCCAAGGAGGCGUCCCCGCUGCCGGCCGAAAGCGCCUCGGCCGGGGCCACCCUGCGGCCACUGCUGCUGUCGGGGCACGGCGCUCGGGAAGCGCACAGCCCCGGGCCGCUGGUGAAGCCCUUCGAGACCGCCUCGGUCAAGUCGGAAAAUUCAGAAGAUGGAGCGGCGUGGAUGCAGGAACCCGGCCGAUAUUCGCCGCCGCCAAGUGAGUGCGCGCCGGGGCAGGAGUAGGAGGACAUAUGAGCCCUACCACCUGCACCCUGAGGAAACACAAGACCAAUCGGAAGCCGCGCACGCCCU2000000009UUACCACA2000000009UCCCAGCUCCUCGCCCUGGAGCGCAAGUUCCGUCAGAAACAGUACCUCUCCAUUGCAGAGCGUGCAGAGUUCUCCAGCUCUCUGAACCUCACAGAGACCCAGGUCAAAAUCUGGUUCCAGA2000000006ACCGAAGGGCCAAGGCGAAAAGACUGCAGGAGGCAGA2000000006ACUGGAAAAGCUGAAAAUGGCUGCAAAACCUAUGCUGCCCUCCAGCUUCAGUCUCCCUUUCCCCAUCAGCUCGCCCCUGCAGGCAGCGUCCAUAUAUGGAGCA2000000009UCCUACCCGUUCCAUAG2000000006ACCUGUGCUUCCCA2000000009UCCCGCCUGUGGG2000000006ACUCUAUGCCACGCCAGUGGGAUAUGGCAUGUACCACCUGUCCUAAGGAAGACCAGAUCAAUAG2000000006ACUCCAUGAUGGAUGCUUGUUUCAAAGGGUUUCCUCUCCCUCUCCACGAAGGCAGUACCAGCCAGUACUCCUGCUCUGCUAACCCUGCGUGCACCACCCUAAGCGGCUAGGCUGACAGGGCCACACGACAUAGCUGAAAUUUGUUCUGUAGGCGGAGGCACCAAGCCCUGUUUUCUUGGUGUAAUCUUCCAGAUGCCCCCUUUUCCUUUCACAAAGAUUGGCUCUGAUGGUUUUUAUGUAUAAAUAUAUAUAUAUAAUAAAAUAUAAUACAUUUUUAUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	533	541	662	699	802	819	833	846	910
Modification Positions	Y	Y	m6A	m6A	Y	m6A	Y	m6A	m6A
Genomic Coordinates	5:174729225:+	5:174729233:+	5:174729354:+	5:174729391:+	5:174729494:+	5:174729511:+	5:174729525:+	5:174729538:+	5:174729602:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	4HMi5ykupT9V 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq bXBqJigD9oV3 iezFbUdmY3A6 Yfn77uLS5tv8