General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000615637
Gene ID:	ENSG00000251493
Gene Name:	FOXD1
Sequence (UNICHARACTER ENCODING)	GGACUCAGCCCUGGCCUCGCCGAGCUCUGUUCUUAGACUCUCACCCGUCCCGCACGUUCCUGGGCGCCUGGCGUUCUGAUUCGCCCGCCCGGGCCCCGCCACCCCCUCCUCAGCUGACGGGGCAAAAGCUGCUCCGAGAGGAGAAGGUCAAGUCCUCCGCCCGGGCCGGGCGCGAGCGGAGCCCAGGGAGCGCAGCAUCCGCGCGGCUACCGCGGCGGCGCAGGAGUUAUAAAGUCGGCGCGCGAGACUCCGCCGCCACCCGGCAGCCCCGGCGCAGCUCCGGCAGCCGCAGUCGCAGCGCCCCCAGCGUGGCGCCCCCCGGCCGGGCCUGCCGCCCGGGACCCGGGCUGGGGCGCAGAGGGAGCCCGGAGCCCGGCGCCCCCAUGCGCCGCCCCGCCGCCGCCGCGCCACAGCUAUGACCCUGAGCACUGAGAUGUCCGAUGCCUCUGGCCUCGCCGAGGAAACAGACAUCGACGUGGUGGGGGAGGGCGAGGACGAAGAAGACGAGGAAGAGGAGGACGACGACGAGGGCGGCGGUGGCGGGCCCCGGCUGGCUGUCCCCGCGCAGCGGCGGCGGCGGCGGCGCUCGUACGCCGGGGAGGACGAGCUGGAGGAUCUGGAGGAGGAGGAGGACGACGAUGACAUCCUGCUGGCCCCGCCUGCUGGGGGCUCCCCGGCGCCCCCGGGCCCGGCCCCGGCGGCGGGGGCAGGAGCCGGUGGGGGCGGCGGCGGCGGCGGCGCGGGCGGCGGCGGGAGCGCGGGUAGCGGCGCCAAGAACCCGCUGGUGAAGCCGCCCUACUCGUAUAUCGCGCUCAUCACUAUGGCCAUCCUGCAGAGCCCCAAGAAGCGGCUGACGCUGAGCGAGAUCUGUGAGUUCAUCAGCGGCCGCUUCCCCUACUACCGGGAGAAGUUCCCCGCCUGGCAGAACAGCAUCCGCCACAACCUCUCGCUCAACGACUGCUUCGUCAAGAUCCCCCGCGAGCCCGGCAACCCGGGCAAGGGCAACUACUGGЖCGCUGGACCCGGAGUCCGCCGACAUGUUCGACAACGGCAGCUUCCUGCGCCGGAGGAAGCGCUUCAAGCGGCAGCCGCUGCUCCCACCCAACGCCGCGGCCGCCGAGUCUCUGCUGCUGCGCGGCGCGGGAGCCGCAGGGGGCGCGGGCGACCCGGCAGCCGCCGCCGCGCUCUUCCCGCCCGCGCCCCCGCCGCCCCCGCAUGCCUACGGCUACGGCCCCUACGGCUGCGGCUACGGCCUGCAGCUGCCGCCUUACGCGCCGCCCUCGGCCCUCUUCGCCGCCGCAGCGGCCGCCGCCGCCGCCGCCGCCUUCCACCCGCACUCGCCCCCGCCGCCCCCGCCACCGCACGGCGCGGCCGCCGAGCUGGCCCGGЖCCGCCUUCGGCUACCGGCCGCACCCGCUCGGCGCCGCCCUACCCGGCCCCCUGCCGGCCUCCGCGGCCAAGGCGGGCGGCCCGGGCGCCUCAGCGCUGGCGCGCUCGCCCUUCUCCAUCGAGAGCAUCAUCGGGGGCAGCUUGGGCCCGGCCGCCGCUGCCGCCGCCGCCGCGCAGGCCGCCGCCGCCGCUCAGGCCUCGCCCUCGCCCUCGCCGGUGGCGGCGCCGCCAGCUCCCGGAUCCAGCGGAGGAGGCUGCGCGGCGCAGGCGGCCGUGGGCCCGGCGGCCGCGCUCACCCGAUCCCUCGUGGCCGCCGCGGCCGCCGCCGCCUCCUCAGUCUCCUCGUCCGCCGCCUUGGGGЖCUCUGCACCAAGGGЖCUGCCCUGUCCAGUGUCGAGAЖCUPUACUGCUAGGAUUUCCAAUUGUUAAUAACGCUAUGUUAGCGCGCUCGAGGAAGAAGGUAGGAAUCCCGGCUCCUUUUCUCGUCUUGGUGGUUCGGUGUUUUGUUCGCUCCUCCAGGCGCGGCCCCUCUCGACCUCGCGCGCCCAUUUUCGCCGCUGCGAAUUCUCGGЖCAAAЖCUGUCAACAGCCCGGGCGCGCCUUUUGGCUCUGCGGGUCCCUCUAUUUAUGCAAAGCCGACCUAUGCUACAGCCCCCCAACCCCCGACCUGGGGUAGGGAGGAAGAGGGUGCCGGGGAAGGGAGUCCGCCCUGUCCAGGCACUAGAGGCUCCCUUGACGUUUGGCAGAUGAAAAACAACUAAGCCUUUUUGAGGUGUAGAGAUUCUCAGGUCCAGGCGUUAAAAAAUAAUGGUCAAAAGAAUAAUACAAAAAUAGUAAAGGUCUUGAAGAAUGCCAGCGAAGCAAUUCUUUUUUAUUUGAGGЖCACUUGUCUGGUGUACUUUUUCAUGAAAAGGAAAAAUGGUUAACAUGUUUACACAAGAAAAAAAGUCAAAAUUAUCAUUUAUUUCAACCUGUGUUUUGUAUCAUAЖCAGACGUGUGGAUUUUUUUGUACUUACUGCGUAUUCUPUACAAGGAGUAUUGUAAAUUUUACUGGCAAUUAUUAUUGUACUAUUCUAAAUGUAAGAUUUUUACACUUUUUCAGAAAUAAAAAUGCUUAAUUUUCAAAGAAAA
Sequence (SHORT NAMES ENCODING)	GGACUCAGCCCUGGCCUCGCCGAGCUCUGUUCUUAGACUCUCACCCGUCCCGCACGUUCCUGGGCGCCUGGCGUUCUGAUUCGCCCGCCCGGGCCCCGCCACCCCCUCCUCAGCUGACGGGGCAAAAGCUGCUCCGAGAGGAGAAGGUCAAGUCCUCCGCCCGGGCCGGGCGCGAGCGGAGCCCAGGGAGCGCAGCAUCCGCGCGGCUACCGCGGCGGCGCAGGAGUUAUAAAGUCGGCGCGCGAGACUCCGCCGCCACCCGGCAGCCCCGGCGCAGCUCCGGCAGCCGCAGUCGCAGCGCCCCCAGCGUGGCGCCCCCCGGCCGGGCCUGCCGCCCGGGACCCGGGCUGGGGCGCAGAGGGAGCCCGGAGCCCGGCGCCCCCAUGCGCCGCCCCGCCGCCGCCGCGCCACAGCUAUGACCCUGAGCACUGAGAUGUCCGAUGCCUCUGGCCUCGCCGAGGAAACAGACAUCGACGUGGUGGGGGAGGGCGAGGACGAAGAAGACGAGGAAGAGGAGGACGACGACGAGGGCGGCGGUGGCGGGCCCCGGCUGGCUGUCCCCGCGCAGCGGCGGCGGCGGCGGCGCUCGUACGCCGGGGAGGACGAGCUGGAGGAUCUGGAGGAGGAGGAGGACGACGAUGACAUCCUGCUGGCCCCGCCUGCUGGGGGCUCCCCGGCGCCCCCGGGCCCGGCCCCGGCGGCGGGGGCAGGAGCCGGUGGGGGCGGCGGCGGCGGCGGCGCGGGCGGCGGCGGGAGCGCGGGUAGCGGCGCCAAGAACCCGCUGGUGAAGCCGCCCUACUCGUAUAUCGCGCUCAUCACUAUGGCCAUCCUGCAGAGCCCCAAGAAGCGGCUGACGCUGAGCGAGAUCUGUGAGUUCAUCAGCGGCCGCUUCCCCUACUACCGGGAGAAGUUCCCCGCCUGGCAGAACAGCAUCCGCCACAACCUCUCGCUCAACGACUGCUUCGUCAAGAUCCCCCGCGAGCCCGGCAACCCGGGCAAGGGCAACUACUGGm6ACGCUGGACCCGGAGUCCGCCGACAUGUUCGACAACGGCAGCUUCCUGCGCCGGAGGAAGCGCUUCAAGCGGCAGCCGCUGCUCCCACCCAACGCCGCGGCCGCCGAGUCUCUGCUGCUGCGCGGCGCGGGAGCCGCAGGGGGCGCGGGCGACCCGGCAGCCGCCGCCGCGCUCUUCCCGCCCGCGCCCCCGCCGCCCCCGCAUGCCUACGGCUACGGCCCCUACGGCUGCGGCUACGGCCUGCAGCUGCCGCCUUACGCGCCGCCCUCGGCCCUCUUCGCCGCCGCAGCGGCCGCCGCCGCCGCCGCCGCCUUCCACCCGCACUCGCCCCCGCCGCCCCCGCCACCGCACGGCGCGGCCGCCGAGCUGGCCCGGm6ACCGCCUUCGGCUACCGGCCGCACCCGCUCGGCGCCGCCCUACCCGGCCCCCUGCCGGCCUCCGCGGCCAAGGCGGGCGGCCCGGGCGCCUCAGCGCUGGCGCGCUCGCCCUUCUCCAUCGAGAGCAUCAUCGGGGGCAGCUUGGGCCCGGCCGCCGCUGCCGCCGCCGCCGCGCAGGCCGCCGCCGCCGCUCAGGCCUCGCCCUCGCCCUCGCCGGUGGCGGCGCCGCCAGCUCCCGGAUCCAGCGGAGGAGGCUGCGCGGCGCAGGCGGCCGUGGGCCCGGCGGCCGCGCUCACCCGAUCCCUCGUGGCCGCCGCGGCCGCCGCCGCCUCCUCAGUCUCCUCGUCCGCCGCCUUGGGGm6ACUCUGCACCAAGGGm6ACUGCCCUGUCCAGUGUCGAGAm6ACUYUACUGCUAGGAUUUCCAAUUGUUAAUAACGCUAUGUUAGCGCGCUCGAGGAAGAAGGUAGGAAUCCCGGCUCCUUUUCUCGUCUUGGUGGUUCGGUGUUUUGUUCGCUCCUCCAGGCGCGGCCCCUCUCGACCUCGCGCGCCCAUUUUCGCCGCUGCGAAUUCUCGGm6ACAAAm6ACUGUCAACAGCCCGGGCGCGCCUUUUGGCUCUGCGGGUCCCUCUAUUUAUGCAAAGCCGACCUAUGCUACAGCCCCCCAACCCCCGACCUGGGGUAGGGAGGAAGAGGGUGCCGGGGAAGGGAGUCCGCCCUGUCCAGGCACUAGAGGCUCCCUUGACGUUUGGCAGAUGAAAAACAACUAAGCCUUUUUGAGGUGUAGAGAUUCUCAGGUCCAGGCGUUAAAAAAUAAUGGUCAAAAGAAUAAUACAAAAAUAGUAAAGGUCUUGAAGAAUGCCAGCGAAGCAAUUCUUUUUUAUUUGAGGm6ACACUUGUCUGGUGUACUUUUUCAUGAAAAGGAAAAAUGGUUAACAUGUUUACACAAGAAAAAAAGUCAAAAUUAUCAUUUAUUUCAACCUGUGUUUUGUAUCAUAm6ACAGACGUGUGGAUUUUUUUGUACUUACUGCGUAUUCUYUACAAGGAGUAUUGUAAAUUUUACUGGCAAUUAUUAUUGUACUAUUCUAAAUGUAAGAUUUUUACACUUUUUCAGAAAUAAAAAUGCUUAAUUUUCAAAGAAAA
Sequence (MODOMICS CODE ENCODING)	GGACUCAGCCCUGGCCUCGCCGAGCUCUGUUCUUAGACUCUCACCCGUCCCGCACGUUCCUGGGCGCCUGGCGUUCUGAUUCGCCCGCCCGGGCCCCGCCACCCCCUCCUCAGCUGACGGGGCAAAAGCUGCUCCGAGAGGAGAAGGUCAAGUCCUCCGCCCGGGCCGGGCGCGAGCGGAGCCCAGGGAGCGCAGCAUCCGCGCGGCUACCGCGGCGGCGCAGGAGUUAUAAAGUCGGCGCGCGAGACUCCGCCGCCACCCGGCAGCCCCGGCGCAGCUCCGGCAGCCGCAGUCGCAGCGCCCCCAGCGUGGCGCCCCCCGGCCGGGCCUGCCGCCCGGGACCCGGGCUGGGGCGCAGAGGGAGCCCGGAGCCCGGCGCCCCCAUGCGCCGCCCCGCCGCCGCCGCGCCACAGCUAUGACCCUGAGCACUGAGAUGUCCGAUGCCUCUGGCCUCGCCGAGGAAACAGACAUCGACGUGGUGGGGGAGGGCGAGGACGAAGAAGACGAGGAAGAGGAGGACGACGACGAGGGCGGCGGUGGCGGGCCCCGGCUGGCUGUCCCCGCGCAGCGGCGGCGGCGGCGGCGCUCGUACGCCGGGGAGGACGAGCUGGAGGAUCUGGAGGAGGAGGAGGACGACGAUGACAUCCUGCUGGCCCCGCCUGCUGGGGGCUCCCCGGCGCCCCCGGGCCCGGCCCCGGCGGCGGGGGCAGGAGCCGGUGGGGGCGGCGGCGGCGGCGGCGCGGGCGGCGGCGGGAGCGCGGGUAGCGGCGCCAAGAACCCGCUGGUGAAGCCGCCCUACUCGUAUAUCGCGCUCAUCACUAUGGCCAUCCUGCAGAGCCCCAAGAAGCGGCUGACGCUGAGCGAGAUCUGUGAGUUCAUCAGCGGCCGCUUCCCCUACUACCGGGAGAAGUUCCCCGCCUGGCAGAACAGCAUCCGCCACAACCUCUCGCUCAACGACUGCUUCGUCAAGAUCCCCCGCGAGCCCGGCAACCCGGGCAAGGGCAACUACUGG2000000006ACGCUGGACCCGGAGUCCGCCGACAUGUUCGACAACGGCAGCUUCCUGCGCCGGAGGAAGCGCUUCAAGCGGCAGCCGCUGCUCCCACCCAACGCCGCGGCCGCCGAGUCUCUGCUGCUGCGCGGCGCGGGAGCCGCAGGGGGCGCGGGCGACCCGGCAGCCGCCGCCGCGCUCUUCCCGCCCGCGCCCCCGCCGCCCCCGCAUGCCUACGGCUACGGCCCCUACGGCUGCGGCUACGGCCUGCAGCUGCCGCCUUACGCGCCGCCCUCGGCCCUCUUCGCCGCCGCAGCGGCCGCCGCCGCCGCCGCCGCCUUCCACCCGCACUCGCCCCCGCCGCCCCCGCCACCGCACGGCGCGGCCGCCGAGCUGGCCCGG2000000006ACCGCCUUCGGCUACCGGCCGCACCCGCUCGGCGCCGCCCUACCCGGCCCCCUGCCGGCCUCCGCGGCCAAGGCGGGCGGCCCGGGCGCCUCAGCGCUGGCGCGCUCGCCCUUCUCCAUCGAGAGCAUCAUCGGGGGCAGCUUGGGCCCGGCCGCCGCUGCCGCCGCCGCCGCGCAGGCCGCCGCCGCCGCUCAGGCCUCGCCCUCGCCCUCGCCGGUGGCGGCGCCGCCAGCUCCCGGAUCCAGCGGAGGAGGCUGCGCGGCGCAGGCGGCCGUGGGCCCGGCGGCCGCGCUCACCCGAUCCCUCGUGGCCGCCGCGGCCGCCGCCGCCUCCUCAGUCUCCUCGUCCGCCGCCUUGGGG2000000006ACUCUGCACCAAGGG2000000006ACUGCCCUGUCCAGUGUCGAGA2000000006ACU2000000009UUACUGCUAGGAUUUCCAAUUGUUAAUAACGCUAUGUUAGCGCGCUCGAGGAAGAAGGUAGGAAUCCCGGCUCCUUUUCUCGUCUUGGUGGUUCGGUGUUUUGUUCGCUCCUCCAGGCGCGGCCCCUCUCGACCUCGCGCGCCCAUUUUCGCCGCUGCGAAUUCUCGG2000000006ACAAA2000000006ACUGUCAACAGCCCGGGCGCGCCUUUUGGCUCUGCGGGUCCCUCUAUUUAUGCAAAGCCGACCUAUGCUACAGCCCCCCAACCCCCGACCUGGGGUAGGGAGGAAGAGGGUGCCGGGGAAGGGAGUCCGCCCUGUCCAGGCACUAGAGGCUCCCUUGACGUUUGGCAGAUGAAAAACAACUAAGCCUUUUUGAGGUGUAGAGAUUCUCAGGUCCAGGCGUUAAAAAAUAAUGGUCAAAAGAAUAAUACAAAAAUAGUAAAGGUCUUGAAGAAUGCCAGCGAAGCAAUUCUUUUUUAUUUGAGG2000000006ACACUUGUCUGGUGUACUUUUUCAUGAAAAGGAAAAAUGGUUAACAUGUUUACACAAGAAAAAAAGUCAAAAUUAUCAUUUAUUUCAACCUGUGUUUUGUAUCAUA2000000006ACAGACGUGUGGAUUUUUUUGUACUUACUGCGUAUUCU2000000009UUACAAGGAGUAUUGUAAAUUUUACUGGCAAUUAUUAUUGUACUAUUCUAAAUGUAAGAUUUUUACACUUUUUCAGAAAUAAAAAUGCUUAAUUUUCAAAGAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1013	1388	1748	1763	1785	1788	1956	1961	2264	2370	2408
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	5:73447765:-	5:73447390:-	5:73447030:-	5:73447015:-	5:73446993:-	5:73446990:-	5:73446822:-	5:73446817:-	5:73446514:-	5:73446408:-	5:73446370:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL	5Nnepx5V7yHo gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V 5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8	4HMi5ykupT9V Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BkoLW2CBToyL BtsJQJ3DteUq iezFbUdmY3A6 JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8