General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000509384
Gene ID:	ENSG00000176018
Gene Name:	LYSMD3
Sequence (UNICHARACTER ENCODING)	GGAGACGUUGGCGGCAGAGGCGGAGGCGGACGGGGUCAGCCCAAAGCAGAGGCUCGGCCAUGAACUUACCCGGGACAGCGGCGGCGGCGGACCUUUUGGCCAUCUUCUCGCAGAGUGCUCCCUGCUAACGGGGЖCAGAUUUUAACAUUAUGGCAGGGAGGCAUCAGAAUCGUAGUUUUCCUCUUCCAGGAGUUCAGUCAAGUGGUCAAGUACAUGCAUUUGGAAAUUGUUCAGACAGUGAUAUUUUGGAGGAGGAUGCUGAAGUGUAUGAACUUCGAUCCAGAGGAAAAGAGAAAGUCCGAAGAAGUACAUCAAGAGAUAGACUUGACGACAUUAUAGUAUUAACAAAAGAUAUACAAGAAGGAGAUACAUUAAAUGCAAUAGCCCUUCAGUACUGUUGUACGGUCUAUCAAAAUUCCAGUAAAAAAGUUCAGUUCCUUGACCGAAACACUUUGUCCUCCAAAAGGAAGACAGACUUCACGUCAUUCAUCUGUUCAAUACUCUUCCGAACAACAGGAAAUUUUGCCAGCUAAUGAUUCUCUUGCUUACAGUGЖCUCAGCUGGUAGCUUUUUAAAAGAAGUAGACCGAGACAUAGAACAAAUAGUAAAGUGUACAGЖCAAUAAGAGAGAGAACCUCAAUGAGGUAGUAUCGGCCUUAACAGCACAACAAAUGCGUUUUGAACCUGAUAACAAAAACACUCAACGUAAAGACCCCUAUUAUGGAGCAGЖCUGGGGAAUAGGGUGGUGGЖCAGCUGUAGUGAUAAUGUUGAUAGUAGGUAUAAUAACACCAGUGUUUUAUUUGUUGUAUUAUGAAAUUUUAGCUAAGGUGGAUGUUAGUCAUCAUUCAACAGUGGЖCUCUUCACAUUUACAUUCAAAAAUCACACCCCCAUCACAGCAGAGAGAAAUGGAAAAUGGAAUUGUGCCAACUAAAGGAAUACAUUUCAGCCAACAAGAUGAUCAUAAЖCUGUAUAGUCAAGAUUCUCAGUCACCUGCUGCUCAACAGGAAACAUAGCAAUUAGCUCAUAAUCAAAUGUUAGUGGUCACAUGUGCAUCUGGAAUGUGGUGAAUCAGUUAUAUCCAAUAAUAGCUUCAAAGGCAGAAUUUAGAGAGAUUGAGGAUGCUUUUGUUUUUAACAAAAGGGUUUCACACUUUGAAAAUUUUUUGAGCAACUAGUUGUUGAUGUUGAGAGCAGUUGAUCCAUAAAUCUGGUGUGUGAAUGUUUCAAGCAGAAAUUAAUUUAAAUGUGUGUUUAGGAAGUACUUAACUUGGAAGAUGUAUCAUUUUUCUUAAAAUGCAUGUUUAAAUUUUAUUUUUUUAAGUAAUUUUUAAAAAGUUUAUUAAUGUUAAAUUUAUGAUGCAGAAUGAUAGCAUCAGAUGUCUGCAGCUGAAAAAAAUUUACUACUAUGAACCCCCAAAAUAUUCAGUUGCAAGAAAAUUUGAUUCUAAAAUUAUUCAUGGUAGGAUACGUAACACACCCCUUCAAAACUUUUAAAAAAUACAUUUAGCACAUGUGCUAUGAAAGCAUACGUACAAAGAGAAA
Sequence (SHORT NAMES ENCODING)	GGAGACGUUGGCGGCAGAGGCGGAGGCGGACGGGGUCAGCCCAAAGCAGAGGCUCGGCCAUGAACUUACCCGGGACAGCGGCGGCGGCGGACCUUUUGGCCAUCUUCUCGCAGAGUGCUCCCUGCUAACGGGGm6ACAGAUUUUAACAUUAUGGCAGGGAGGCAUCAGAAUCGUAGUUUUCCUCUUCCAGGAGUUCAGUCAAGUGGUCAAGUACAUGCAUUUGGAAAUUGUUCAGACAGUGAUAUUUUGGAGGAGGAUGCUGAAGUGUAUGAACUUCGAUCCAGAGGAAAAGAGAAAGUCCGAAGAAGUACAUCAAGAGAUAGACUUGACGACAUUAUAGUAUUAACAAAAGAUAUACAAGAAGGAGAUACAUUAAAUGCAAUAGCCCUUCAGUACUGUUGUACGGUCUAUCAAAAUUCCAGUAAAAAAGUUCAGUUCCUUGACCGAAACACUUUGUCCUCCAAAAGGAAGACAGACUUCACGUCAUUCAUCUGUUCAAUACUCUUCCGAACAACAGGAAAUUUUGCCAGCUAAUGAUUCUCUUGCUUACAGUGm6ACUCAGCUGGUAGCUUUUUAAAAGAAGUAGACCGAGACAUAGAACAAAUAGUAAAGUGUACAGm6ACAAUAAGAGAGAGAACCUCAAUGAGGUAGUAUCGGCCUUAACAGCACAACAAAUGCGUUUUGAACCUGAUAACAAAAACACUCAACGUAAAGACCCCUAUUAUGGAGCAGm6ACUGGGGAAUAGGGUGGUGGm6ACAGCUGUAGUGAUAAUGUUGAUAGUAGGUAUAAUAACACCAGUGUUUUAUUUGUUGUAUUAUGAAAUUUUAGCUAAGGUGGAUGUUAGUCAUCAUUCAACAGUGGm6ACUCUUCACAUUUACAUUCAAAAAUCACACCCCCAUCACAGCAGAGAGAAAUGGAAAAUGGAAUUGUGCCAACUAAAGGAAUACAUUUCAGCCAACAAGAUGAUCAUAAm6ACUGUAUAGUCAAGAUUCUCAGUCACCUGCUGCUCAACAGGAAACAUAGCAAUUAGCUCAUAAUCAAAUGUUAGUGGUCACAUGUGCAUCUGGAAUGUGGUGAAUCAGUUAUAUCCAAUAAUAGCUUCAAAGGCAGAAUUUAGAGAGAUUGAGGAUGCUUUUGUUUUUAACAAAAGGGUUUCACACUUUGAAAAUUUUUUGAGCAACUAGUUGUUGAUGUUGAGAGCAGUUGAUCCAUAAAUCUGGUGUGUGAAUGUUUCAAGCAGAAAUUAAUUUAAAUGUGUGUUUAGGAAGUACUUAACUUGGAAGAUGUAUCAUUUUUCUUAAAAUGCAUGUUUAAAUUUUAUUUUUUUAAGUAAUUUUUAAAAAGUUUAUUAAUGUUAAAUUUAUGAUGCAGAAUGAUAGCAUCAGAUGUCUGCAGCUGAAAAAAAUUUACUACUAUGAACCCCCAAAAUAUUCAGUUGCAAGAAAAUUUGAUUCUAAAAUUAUUCAUGGUAGGAUACGUAACACACCCCUUCAAAACUUUUAAAAAAUACAUUUAGCACAUGUGCUAUGAAAGCAUACGUACAAAGAGAAA
Sequence (MODOMICS CODE ENCODING)	GGAGACGUUGGCGGCAGAGGCGGAGGCGGACGGGGUCAGCCCAAAGCAGAGGCUCGGCCAUGAACUUACCCGGGACAGCGGCGGCGGCGGACCUUUUGGCCAUCUUCUCGCAGAGUGCUCCCUGCUAACGGGG2000000006ACAGAUUUUAACAUUAUGGCAGGGAGGCAUCAGAAUCGUAGUUUUCCUCUUCCAGGAGUUCAGUCAAGUGGUCAAGUACAUGCAUUUGGAAAUUGUUCAGACAGUGAUAUUUUGGAGGAGGAUGCUGAAGUGUAUGAACUUCGAUCCAGAGGAAAAGAGAAAGUCCGAAGAAGUACAUCAAGAGAUAGACUUGACGACAUUAUAGUAUUAACAAAAGAUAUACAAGAAGGAGAUACAUUAAAUGCAAUAGCCCUUCAGUACUGUUGUACGGUCUAUCAAAAUUCCAGUAAAAAAGUUCAGUUCCUUGACCGAAACACUUUGUCCUCCAAAAGGAAGACAGACUUCACGUCAUUCAUCUGUUCAAUACUCUUCCGAACAACAGGAAAUUUUGCCAGCUAAUGAUUCUCUUGCUUACAGUG2000000006ACUCAGCUGGUAGCUUUUUAAAAGAAGUAGACCGAGACAUAGAACAAAUAGUAAAGUGUACAG2000000006ACAAUAAGAGAGAGAACCUCAAUGAGGUAGUAUCGGCCUUAACAGCACAACAAAUGCGUUUUGAACCUGAUAACAAAAACACUCAACGUAAAGACCCCUAUUAUGGAGCAG2000000006ACUGGGGAAUAGGGUGGUGG2000000006ACAGCUGUAGUGAUAAUGUUGAUAGUAGGUAUAAUAACACCAGUGUUUUAUUUGUUGUAUUAUGAAAUUUUAGCUAAGGUGGAUGUUAGUCAUCAUUCAACAGUGG2000000006ACUCUUCACAUUUACAUUCAAAAAUCACACCCCCAUCACAGCAGAGAGAAAUGGAAAAUGGAAUUGUGCCAACUAAAGGAAUACAUUUCAGCCAACAAGAUGAUCAUAA2000000006ACUGUAUAGUCAAGAUUCUCAGUCACCUGCUGCUCAACAGGAAACAUAGCAAUUAGCUCAUAAUCAAAUGUUAGUGGUCACAUGUGCAUCUGGAAUGUGGUGAAUCAGUUAUAUCCAAUAAUAGCUUCAAAGGCAGAAUUUAGAGAGAUUGAGGAUGCUUUUGUUUUUAACAAAAGGGUUUCACACUUUGAAAAUUUUUUGAGCAACUAGUUGUUGAUGUUGAGAGCAGUUGAUCCAUAAAUCUGGUGUGUGAAUGUUUCAAGCAGAAAUUAAUUUAAAUGUGUGUUUAGGAAGUACUUAACUUGGAAGAUGUAUCAUUUUUCUUAAAAUGCAUGUUUAAAUUUUAUUUUUUUAAGUAAUUUUUAAAAAGUUUAUUAAUGUUAAAUUUAUGAUGCAGAAUGAUAGCAUCAGAUGUCUGCAGCUGAAAAAAAUUUACUACUAUGAACCCCCAAAAUAUUCAGUUGCAAGAAAAUUUGAUUCUAAAAUUAUUCAUGGUAGGAUACGUAACACACCCCUUCAAAACUUUUAAAAAAUACAUUUAGCACAUGUGCUAUGAAAGCAUACGUACAAAGAGAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	134	553	616	727	747	853	962
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	5:90529451:-	5:90519276:-	5:90519213:-	5:90519102:-	5:90519082:-	5:90518976:-	5:90518867:-
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	4HMi5ykupT9V 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL	4HMi5ykupT9V 5FhTyQVy2tKW 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9 UKen6WEino9G	aJksAshEgQ8U 93arJtwJmuS9 BkoLW2CBToyL Lny8GcCeVGc9	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 Lny8GcCeVGc9 UKen6WEino9G	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn D6ncpa2PPWj3 BkoLW2CBToyL Lny8GcCeVGc9 UKen6WEino9G	5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G