General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000684456
Gene ID:	ENSG00000154153
Gene Name:	RETREG1
Sequence (UNICHARACTER ENCODING)	GGCAGUGAUAAUAACCCAGCUCCUAGCUUCAUUCAAGGGAGGCAGGCGCUUUGGAAGUUUGUAAACACCAACUUUCUGAGUAAGGGAGGAGCACUUUUUUUCCAAAAAGGAAAGAACGUCUCUACUGGGUUUUUUUCCUCCUGAUAUUCAGCAUUAGAGUAGAAAAGAAACUAUUGUUUGGCCACAUUAGCCGUGGUUAGCAGGUGCUGCAGCCUUUGCCACUGUUAUUAUUUUUAAAGGGCAGAAAUGCCUGAAGGUGAAGACUUUGGACCAGGCAAAAGUACUGUGUGCAUUUUUGUGUCCAUUGUUUAAAUGUAAUGAUAUUGGACAAAAAAUUUACAGCAAAAUUAAGUCAGUUCUGCUGAAACUGGAUUUUGGAAUUGGAGAAUAUAUUAAUCAGAAGAAACGUGAGAGAUCUGAAGCAGACAAAGAAAAAAGUCACAAAGAUGACAGUGAAUUAGACUUUUCAGCUCUUUGUCCUAAGAUUAGCCUCACGGUUGCUGCCAAAGAGUUAUCUGUGUCUGACACAGACGUCUCAGAGGUAUCCUGGACUGAUAAUGGGACCUUCAACCUUUCAGAAGGAUACACUCCACAGACAGACACUUCUGAUGAUCUUGACCGACCCAGUGAGGAAGUUUUCUCUAGAGAUCUUUCAGAUUUUCCAUCUCUAGAAAAUGGCAUGGGAACAAAUGAUGAAGAUGAAUUAAGCCUUGGUUUGCCCACUGAGCUCAAGAGAAAGAAGGAACAGUUGGACAGUGGUCACAGACCAAGCAAAGAGЖCGCAAUCAGCAGCUGGUCUCACCCUUCCUCUGAЖCAGUGACCAAACCUUUCACCUGAUGAGCAACCUGGCUGGGGAUGUUAUCACAGCUGCAGUGACUGCAGCUAUCAAAGЖCCAGUUAGAGGGUGUGCAGCAAGCACUUUCUCAGGCUGCCCCCAUCCCAGAAGAGGACACAGACACUGAAGAAGGUGAUGACUUUGAЖCUACUUGACCAGUCAGAGCUGGAUCAAAUUGAGAGUGAAUUGGGACUUACACAAGACCAGGAAGCAGAAGCACAGCAAAAUAAGAAGUCUUCAGGUUUCCUUUCAAAUCUGCUGGGAGGCCAUUAAUCUAGGAAUCAGCUUGCAACAGAGCACAAAAAACACCAAAAAAAUUUCAAACAAGAAAAAAAAAAAAAAAAGGAAAAGAAAAAAAUUGAЖCUGUAAGCUUUAAUGAUUACUUUAGAUUUGUUUUAUUUUCCCUCCUGCAGUGAAUUAAUUGGAUAUAUAUCAGCUGACACUGAUAGAUUGAUAUUUCUGAUCGUUAUUUUUGUGUAAUAAGCAUGGAAAUGAЖCUUUAUACACACCACUGUGUUGUCAGAGAUAAAUAUUAGGGGUUGUUUUUAAAGCAAAAAGAAAAAAACAAAAACCAAACUAUUAAAAUCCUCCUAUAAAUAUUCUUUUUCUUUACAGUUUUUCAAGCAUGCAAAACAGUUUAUUGUAACUUACUGAAAAAUAUUAACAAUUAAUUGUGAAUACAUGCUGUUACCAGCUUCCUUAUUCCUAAUACCUGGAAAAUUUUUUUUUCAACGGAUAGAUUUUGAUGUAAAAAAGACCGAAAUUAUCAAGGUAUCUUAGUUGAAGGACUUGGGAAAUACUAUCAAAA
Sequence (SHORT NAMES ENCODING)	GGCAGUGAUAAUAACCCAGCUCCUAGCUUCAUUCAAGGGAGGCAGGCGCUUUGGAAGUUUGUAAACACCAACUUUCUGAGUAAGGGAGGAGCACUUUUUUUCCAAAAAGGAAAGAACGUCUCUACUGGGUUUUUUUCCUCCUGAUAUUCAGCAUUAGAGUAGAAAAGAAACUAUUGUUUGGCCACAUUAGCCGUGGUUAGCAGGUGCUGCAGCCUUUGCCACUGUUAUUAUUUUUAAAGGGCAGAAAUGCCUGAAGGUGAAGACUUUGGACCAGGCAAAAGUACUGUGUGCAUUUUUGUGUCCAUUGUUUAAAUGUAAUGAUAUUGGACAAAAAAUUUACAGCAAAAUUAAGUCAGUUCUGCUGAAACUGGAUUUUGGAAUUGGAGAAUAUAUUAAUCAGAAGAAACGUGAGAGAUCUGAAGCAGACAAAGAAAAAAGUCACAAAGAUGACAGUGAAUUAGACUUUUCAGCUCUUUGUCCUAAGAUUAGCCUCACGGUUGCUGCCAAAGAGUUAUCUGUGUCUGACACAGACGUCUCAGAGGUAUCCUGGACUGAUAAUGGGACCUUCAACCUUUCAGAAGGAUACACUCCACAGACAGACACUUCUGAUGAUCUUGACCGACCCAGUGAGGAAGUUUUCUCUAGAGAUCUUUCAGAUUUUCCAUCUCUAGAAAAUGGCAUGGGAACAAAUGAUGAAGAUGAAUUAAGCCUUGGUUUGCCCACUGAGCUCAAGAGAAAGAAGGAACAGUUGGACAGUGGUCACAGACCAAGCAAAGAGm6ACGCAAUCAGCAGCUGGUCUCACCCUUCCUCUGAm6ACAGUGACCAAACCUUUCACCUGAUGAGCAACCUGGCUGGGGAUGUUAUCACAGCUGCAGUGACUGCAGCUAUCAAAGm6ACCAGUUAGAGGGUGUGCAGCAAGCACUUUCUCAGGCUGCCCCCAUCCCAGAAGAGGACACAGACACUGAAGAAGGUGAUGACUUUGAm6ACUACUUGACCAGUCAGAGCUGGAUCAAAUUGAGAGUGAAUUGGGACUUACACAAGACCAGGAAGCAGAAGCACAGCAAAAUAAGAAGUCUUCAGGUUUCCUUUCAAAUCUGCUGGGAGGCCAUUAAUCUAGGAAUCAGCUUGCAACAGAGCACAAAAAACACCAAAAAAAUUUCAAACAAGAAAAAAAAAAAAAAAAGGAAAAGAAAAAAAUUGAm6ACUGUAAGCUUUAAUGAUUACUUUAGAUUUGUUUUAUUUUCCCUCCUGCAGUGAAUUAAUUGGAUAUAUAUCAGCUGACACUGAUAGAUUGAUAUUUCUGAUCGUUAUUUUUGUGUAAUAAGCAUGGAAAUGAm6ACUUUAUACACACCACUGUGUUGUCAGAGAUAAAUAUUAGGGGUUGUUUUUAAAGCAAAAAGAAAAAAACAAAAACCAAACUAUUAAAAUCCUCCUAUAAAUAUUCUUUUUCUUUACAGUUUUUCAAGCAUGCAAAACAGUUUAUUGUAACUUACUGAAAAAUAUUAACAAUUAAUUGUGAAUACAUGCUGUUACCAGCUUCCUUAUUCCUAAUACCUGGAAAAUUUUUUUUUCAACGGAUAGAUUUUGAUGUAAAAAAGACCGAAAUUAUCAAGGUAUCUUAGUUGAAGGACUUGGGAAAUACUAUCAAAA
Sequence (MODOMICS CODE ENCODING)	GGCAGUGAUAAUAACCCAGCUCCUAGCUUCAUUCAAGGGAGGCAGGCGCUUUGGAAGUUUGUAAACACCAACUUUCUGAGUAAGGGAGGAGCACUUUUUUUCCAAAAAGGAAAGAACGUCUCUACUGGGUUUUUUUCCUCCUGAUAUUCAGCAUUAGAGUAGAAAAGAAACUAUUGUUUGGCCACAUUAGCCGUGGUUAGCAGGUGCUGCAGCCUUUGCCACUGUUAUUAUUUUUAAAGGGCAGAAAUGCCUGAAGGUGAAGACUUUGGACCAGGCAAAAGUACUGUGUGCAUUUUUGUGUCCAUUGUUUAAAUGUAAUGAUAUUGGACAAAAAAUUUACAGCAAAAUUAAGUCAGUUCUGCUGAAACUGGAUUUUGGAAUUGGAGAAUAUAUUAAUCAGAAGAAACGUGAGAGAUCUGAAGCAGACAAAGAAAAAAGUCACAAAGAUGACAGUGAAUUAGACUUUUCAGCUCUUUGUCCUAAGAUUAGCCUCACGGUUGCUGCCAAAGAGUUAUCUGUGUCUGACACAGACGUCUCAGAGGUAUCCUGGACUGAUAAUGGGACCUUCAACCUUUCAGAAGGAUACACUCCACAGACAGACACUUCUGAUGAUCUUGACCGACCCAGUGAGGAAGUUUUCUCUAGAGAUCUUUCAGAUUUUCCAUCUCUAGAAAAUGGCAUGGGAACAAAUGAUGAAGAUGAAUUAAGCCUUGGUUUGCCCACUGAGCUCAAGAGAAAGAAGGAACAGUUGGACAGUGGUCACAGACCAAGCAAAGAG2000000006ACGCAAUCAGCAGCUGGUCUCACCCUUCCUCUGA2000000006ACAGUGACCAAACCUUUCACCUGAUGAGCAACCUGGCUGGGGAUGUUAUCACAGCUGCAGUGACUGCAGCUAUCAAAG2000000006ACCAGUUAGAGGGUGUGCAGCAAGCACUUUCUCAGGCUGCCCCCAUCCCAGAAGAGGACACAGACACUGAAGAAGGUGAUGACUUUGA2000000006ACUACUUGACCAGUCAGAGCUGGAUCAAAUUGAGAGUGAAUUGGGACUUACACAAGACCAGGAAGCAGAAGCACAGCAAAAUAAGAAGUCUUCAGGUUUCCUUUCAAAUCUGCUGGGAGGCCAUUAAUCUAGGAAUCAGCUUGCAACAGAGCACAAAAAACACCAAAAAAAUUUCAAACAAGAAAAAAAAAAAAAAAAGGAAAAGAAAAAAAUUGA2000000006ACUGUAAGCUUUAAUGAUUACUUUAGAUUUGUUUUAUUUUCCCUCCUGCAGUGAAUUAAUUGGAUAUAUAUCAGCUGACACUGAUAGAUUGAUAUUUCUGAUCGUUAUUUUUGUGUAAUAAGCAUGGAAAUGA2000000006ACUUUAUACACACCACUGUGUUGUCAGAGAUAAAUAUUAGGGGUUGUUUUUAAAGCAAAAAGAAAAAAACAAAAACCAAACUAUUAAAAUCCUCCUAUAAAUAUUCUUUUUCUUUACAGUUUUUCAAGCAUGCAAAACAGUUUAUUGUAACUUACUGAAAAAUAUUAACAAUUAAUUGUGAAUACAUGCUGUUACCAGCUUCCUUAUUCCUAAUACCUGGAAAAUUUUUUUUUCAACGGAUAGAUUUUGAUGUAAAAAAGACCGAAAUUAUCAAGGUAUCUUAGUUGAAGGACUUGGGAAAUACUAUCAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	779	813	891	979	1195	1328
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	5:16475067:-	5:16475033:-	5:16474955:-	5:16474867:-	5:16474651:-	5:16474518:-
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	Ap2q43bQLNek msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	6AyXsheySjfx Ap2q43bQLNek KRfQJWH4K5KH msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 UKen6WEino9G	msuJfBpJvM5H VyCX26p5UBRL Lny8GcCeVGc9	aJksAshEgQ8U Lny8GcCeVGc9	KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G