Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000416865
Gene ID: ENSG00000112851
Gene Name: ERBIN
Sequence (UNICHARACTER ENCODING) UUUUUUUCGGCGGAGAUCCUCGUUGGGGCUGGGAAACUCCUGCAAAACUCGAGACCAGGAAGCCAGCCCGCACCCCAACCCCCACCAAAGCCACCUACUCUUCUUCUGUGGGAGGCCAGUCCACAUCCGCUCUCACCCGAGAGAGAUAUUCAGCUGGAUCCAAAGUGЖCUGAUGAAGGGAAGGAAAUCAUGUCAAGCGAAGCCUUGAAAAAGCUGCCCUGAGACGGUGUCCCGCCGAAAGAAUGUUGGCUCAAUUAAGAAACAUCAGGGAGAUAAAUUCAACCCAGUGUGUCUAAAAAUGACUACAAAACGAAGUUUGUUUGUGCGGUUGGUACCAUGUCGCUGUCUACGAGGGGAAGAGGAGACUGUCACUACUCUUGAUUAUUCUCAUUGCAGCUUAGAACAAGUUCCGAAAGAGAUUUUUACUUUUGAAAAAACCUUGGAGGAACUCUAUUUAGAUGCUAAUCAGAUUGAAGAGCUUCCAAAGCAACUUUUUAACUGUCAGUCUUUACACAAACUGAGUUUGCCAGACAAUGAUUUAACAACGUUACCAGCAUCCAUUGCAAACCUUAUUAAUCUCAGGGAACUGGAUGUCAGCAAGAAUGGAAUACAGGAGUUUCCAGAAAAUAUAAAAAAUUGUAAAGUUUUGACAAUUGUGGAGGCCAGUGUAAACCCUAUUUCCAAGCUCCCUGAUGGAUUUUCUCAGCUGUUAAACCUAACCCAGUUGUAUCUGAAUGAUGCUUUUCUUGAGUUCUUGCCAGCAAAUUUUGGCAGAUUAACUAAACUCCAAAUAUUAGAGCUUAGAGAAAACCAGUUAAAAAUGUUGCCUAAAACUAUGAAUAGACUGACCCAGCUGGAAAGACUGGAUUUGGGAAGUAACGAAUUCACGGAAGUGCCUGAAGUACUUGAGCAACUAAGUGGAUUGAAAGAGUUUUGGAUGGAUGCUAAUAGACUGACUUUUAUUCCAGGGUUUAUUGGUAGUUUGAAACAGCUCACAUAUUUGGAUGUUUCUAAAAAUAAUAUUGAAAUGGUUGAAGAAGGAAUUUCAACAUGUGAAAACCUUCAAGACCUCCUAUUAUCAAGCAAUUCACUUCAGCAGCUUCCUGAGACUAUUGGUUCGUUGAAGAAUAUAACAACGCUUAAAAUAGAUGAAAACCAGUUAAUGUAUCUGCCAGACUCUAUAGGAGGGUUAAUAUCAGUAGAAGAACUGGAUUGUAGUUUCAAUGAAGUUGAAGCUUUGCCUUCAUCUAUUGGGCAGCUUACUAACUUAAGAACUUUUGCUGCUGAUCAUAAUUACUUACAGCAGUUGCCCCCAGAGAUUGGAAGCUGGAAAAAUAUAACUGUGCUGUUUCUCCAUUCCAAUAAACUUGAGACACUUCCAGAGGAAAUGGGUGAUAUGCAAAAAUUAAAAGUCAUUAAUUUAAGUGAUAAUAGAUUAAAGAAUUUACCCUUUAGCUUUACAAAGCUACAGCAAUUGACAGCUAUGUGGCUCUCAGAUAAUCAGAGCAUGCUGUCAAGGUCCUUUAAUUCCAAUUUUACUACUGUAAGCAGUUUUCACUGUGGCAGCUCUAGGGAUCUGCAUGGCAGCCAGGGCAGUCUUGCCUUGAGUGUUGCAGACAGAAGAGGUUCUGGUGGGCACAUUUUUCGAAUGCCUUUGAGUAAUGGACAGAUGGGCCAGCCUCUCAGGCCUCAGGCAAAUUAUAGUCAAAUACAUCACCCCCCUCAGGCAUCUGUGGCAAGGCAUCCCUCUAGAGAACAACUAAUUGAUUACUUGAUGCUGAAAGUGGCCCACCAGCCUCCAUAUACACAGCCCCAUUGUUCUCCUAGACAAGGCCAUGAACUGGCAAAACAAGAGAUUCGAGUGAGGGUUGAAAAGGAUCCAGAACUUGGAUUUAGCAUAUCAGGUGGUGUCGGGGGUAGAGGAAACCCAUUCAGACCUGAUGAUGAUGGUAUAUUUGUAACAAGGGUACAACCUGAAGGACCAGCAUCAAAAUUACUGCAGCCAGGUGAUAAAAUUAUUCAGGCUAAUGGCUACAGUUUUAUAAAUAUUGAACAUGGACAAGCAGUGUCCUUGCUAAAAЖCUUUCCAGAAUACAGUUGAACUCAUCAUUGUACGAGAAGUUUCCUCAUAAGCACUGUGGACAAAAAAAGCGGGGAAGACAGCAAGAUUUAUUGGAAGAUACUUACAGGGGAAAUUAAUAUUUUGЖCUAUUUUUAUAUAUAAAGAAGAACUCAAAAAAUUAUGUUCAAAUUUGUACAUUAAUGAAAUAAUGGAЖCUUGUGGUUAGAGGGAAAGAACCACUGUACAGAAUAUAAAGGAGЖCUGUUGAAUUCAUACCAUAUAAAACUUGUUAGG
Sequence (SHORT NAMES ENCODING) UUUUUUUCGGCGGAGAUCCUCGUUGGGGCUGGGAAACUCCUGCAAAACUCGAGACCAGGAAGCCAGCCCGCACCCCAACCCCCACCAAAGCCACCUACUCUUCUUCUGUGGGAGGCCAGUCCACAUCCGCUCUCACCCGAGAGAGAUAUUCAGCUGGAUCCAAAGUGm6ACUGAUGAAGGGAAGGAAAUCAUGUCAAGCGAAGCCUUGAAAAAGCUGCCCUGAGACGGUGUCCCGCCGAAAGAAUGUUGGCUCAAUUAAGAAACAUCAGGGAGAUAAAUUCAACCCAGUGUGUCUAAAAAUGACUACAAAACGAAGUUUGUUUGUGCGGUUGGUACCAUGUCGCUGUCUACGAGGGGAAGAGGAGACUGUCACUACUCUUGAUUAUUCUCAUUGCAGCUUAGAACAAGUUCCGAAAGAGAUUUUUACUUUUGAAAAAACCUUGGAGGAACUCUAUUUAGAUGCUAAUCAGAUUGAAGAGCUUCCAAAGCAACUUUUUAACUGUCAGUCUUUACACAAACUGAGUUUGCCAGACAAUGAUUUAACAACGUUACCAGCAUCCAUUGCAAACCUUAUUAAUCUCAGGGAACUGGAUGUCAGCAAGAAUGGAAUACAGGAGUUUCCAGAAAAUAUAAAAAAUUGUAAAGUUUUGACAAUUGUGGAGGCCAGUGUAAACCCUAUUUCCAAGCUCCCUGAUGGAUUUUCUCAGCUGUUAAACCUAACCCAGUUGUAUCUGAAUGAUGCUUUUCUUGAGUUCUUGCCAGCAAAUUUUGGCAGAUUAACUAAACUCCAAAUAUUAGAGCUUAGAGAAAACCAGUUAAAAAUGUUGCCUAAAACUAUGAAUAGACUGACCCAGCUGGAAAGACUGGAUUUGGGAAGUAACGAAUUCACGGAAGUGCCUGAAGUACUUGAGCAACUAAGUGGAUUGAAAGAGUUUUGGAUGGAUGCUAAUAGACUGACUUUUAUUCCAGGGUUUAUUGGUAGUUUGAAACAGCUCACAUAUUUGGAUGUUUCUAAAAAUAAUAUUGAAAUGGUUGAAGAAGGAAUUUCAACAUGUGAAAACCUUCAAGACCUCCUAUUAUCAAGCAAUUCACUUCAGCAGCUUCCUGAGACUAUUGGUUCGUUGAAGAAUAUAACAACGCUUAAAAUAGAUGAAAACCAGUUAAUGUAUCUGCCAGACUCUAUAGGAGGGUUAAUAUCAGUAGAAGAACUGGAUUGUAGUUUCAAUGAAGUUGAAGCUUUGCCUUCAUCUAUUGGGCAGCUUACUAACUUAAGAACUUUUGCUGCUGAUCAUAAUUACUUACAGCAGUUGCCCCCAGAGAUUGGAAGCUGGAAAAAUAUAACUGUGCUGUUUCUCCAUUCCAAUAAACUUGAGACACUUCCAGAGGAAAUGGGUGAUAUGCAAAAAUUAAAAGUCAUUAAUUUAAGUGAUAAUAGAUUAAAGAAUUUACCCUUUAGCUUUACAAAGCUACAGCAAUUGACAGCUAUGUGGCUCUCAGAUAAUCAGAGCAUGCUGUCAAGGUCCUUUAAUUCCAAUUUUACUACUGUAAGCAGUUUUCACUGUGGCAGCUCUAGGGAUCUGCAUGGCAGCCAGGGCAGUCUUGCCUUGAGUGUUGCAGACAGAAGAGGUUCUGGUGGGCACAUUUUUCGAAUGCCUUUGAGUAAUGGACAGAUGGGCCAGCCUCUCAGGCCUCAGGCAAAUUAUAGUCAAAUACAUCACCCCCCUCAGGCAUCUGUGGCAAGGCAUCCCUCUAGAGAACAACUAAUUGAUUACUUGAUGCUGAAAGUGGCCCACCAGCCUCCAUAUACACAGCCCCAUUGUUCUCCUAGACAAGGCCAUGAACUGGCAAAACAAGAGAUUCGAGUGAGGGUUGAAAAGGAUCCAGAACUUGGAUUUAGCAUAUCAGGUGGUGUCGGGGGUAGAGGAAACCCAUUCAGACCUGAUGAUGAUGGUAUAUUUGUAACAAGGGUACAACCUGAAGGACCAGCAUCAAAAUUACUGCAGCCAGGUGAUAAAAUUAUUCAGGCUAAUGGCUACAGUUUUAUAAAUAUUGAACAUGGACAAGCAGUGUCCUUGCUAAAAm6ACUUUCCAGAAUACAGUUGAACUCAUCAUUGUACGAGAAGUUUCCUCAUAAGCACUGUGGACAAAAAAAGCGGGGAAGACAGCAAGAUUUAUUGGAAGAUACUUACAGGGGAAAUUAAUAUUUUGm6ACUAUUUUUAUAUAUAAAGAAGAACUCAAAAAAUUAUGUUCAAAUUUGUACAUUAAUGAAAUAAUGGAm6ACUUGUGGUUAGAGGGAAAGAACCACUGUACAGAAUAUAAAGGAGm6ACUGUUGAAUUCAUACCAUAUAAAACUUGUUAGG
Sequence (MODOMICS CODE ENCODING) UUUUUUUCGGCGGAGAUCCUCGUUGGGGCUGGGAAACUCCUGCAAAACUCGAGACCAGGAAGCCAGCCCGCACCCCAACCCCCACCAAAGCCACCUACUCUUCUUCUGUGGGAGGCCAGUCCACAUCCGCUCUCACCCGAGAGAGAUAUUCAGCUGGAUCCAAAGUG2000000006ACUGAUGAAGGGAAGGAAAUCAUGUCAAGCGAAGCCUUGAAAAAGCUGCCCUGAGACGGUGUCCCGCCGAAAGAAUGUUGGCUCAAUUAAGAAACAUCAGGGAGAUAAAUUCAACCCAGUGUGUCUAAAAAUGACUACAAAACGAAGUUUGUUUGUGCGGUUGGUACCAUGUCGCUGUCUACGAGGGGAAGAGGAGACUGUCACUACUCUUGAUUAUUCUCAUUGCAGCUUAGAACAAGUUCCGAAAGAGAUUUUUACUUUUGAAAAAACCUUGGAGGAACUCUAUUUAGAUGCUAAUCAGAUUGAAGAGCUUCCAAAGCAACUUUUUAACUGUCAGUCUUUACACAAACUGAGUUUGCCAGACAAUGAUUUAACAACGUUACCAGCAUCCAUUGCAAACCUUAUUAAUCUCAGGGAACUGGAUGUCAGCAAGAAUGGAAUACAGGAGUUUCCAGAAAAUAUAAAAAAUUGUAAAGUUUUGACAAUUGUGGAGGCCAGUGUAAACCCUAUUUCCAAGCUCCCUGAUGGAUUUUCUCAGCUGUUAAACCUAACCCAGUUGUAUCUGAAUGAUGCUUUUCUUGAGUUCUUGCCAGCAAAUUUUGGCAGAUUAACUAAACUCCAAAUAUUAGAGCUUAGAGAAAACCAGUUAAAAAUGUUGCCUAAAACUAUGAAUAGACUGACCCAGCUGGAAAGACUGGAUUUGGGAAGUAACGAAUUCACGGAAGUGCCUGAAGUACUUGAGCAACUAAGUGGAUUGAAAGAGUUUUGGAUGGAUGCUAAUAGACUGACUUUUAUUCCAGGGUUUAUUGGUAGUUUGAAACAGCUCACAUAUUUGGAUGUUUCUAAAAAUAAUAUUGAAAUGGUUGAAGAAGGAAUUUCAACAUGUGAAAACCUUCAAGACCUCCUAUUAUCAAGCAAUUCACUUCAGCAGCUUCCUGAGACUAUUGGUUCGUUGAAGAAUAUAACAACGCUUAAAAUAGAUGAAAACCAGUUAAUGUAUCUGCCAGACUCUAUAGGAGGGUUAAUAUCAGUAGAAGAACUGGAUUGUAGUUUCAAUGAAGUUGAAGCUUUGCCUUCAUCUAUUGGGCAGCUUACUAACUUAAGAACUUUUGCUGCUGAUCAUAAUUACUUACAGCAGUUGCCCCCAGAGAUUGGAAGCUGGAAAAAUAUAACUGUGCUGUUUCUCCAUUCCAAUAAACUUGAGACACUUCCAGAGGAAAUGGGUGAUAUGCAAAAAUUAAAAGUCAUUAAUUUAAGUGAUAAUAGAUUAAAGAAUUUACCCUUUAGCUUUACAAAGCUACAGCAAUUGACAGCUAUGUGGCUCUCAGAUAAUCAGAGCAUGCUGUCAAGGUCCUUUAAUUCCAAUUUUACUACUGUAAGCAGUUUUCACUGUGGCAGCUCUAGGGAUCUGCAUGGCAGCCAGGGCAGUCUUGCCUUGAGUGUUGCAGACAGAAGAGGUUCUGGUGGGCACAUUUUUCGAAUGCCUUUGAGUAAUGGACAGAUGGGCCAGCCUCUCAGGCCUCAGGCAAAUUAUAGUCAAAUACAUCACCCCCCUCAGGCAUCUGUGGCAAGGCAUCCCUCUAGAGAACAACUAAUUGAUUACUUGAUGCUGAAAGUGGCCCACCAGCCUCCAUAUACACAGCCCCAUUGUUCUCCUAGACAAGGCCAUGAACUGGCAAAACAAGAGAUUCGAGUGAGGGUUGAAAAGGAUCCAGAACUUGGAUUUAGCAUAUCAGGUGGUGUCGGGGGUAGAGGAAACCCAUUCAGACCUGAUGAUGAUGGUAUAUUUGUAACAAGGGUACAACCUGAAGGACCAGCAUCAAAAUUACUGCAGCCAGGUGAUAAAAUUAUUCAGGCUAAUGGCUACAGUUUUAUAAAUAUUGAACAUGGACAAGCAGUGUCCUUGCUAAAA2000000006ACUUUCCAGAAUACAGUUGAACUCAUCAUUGUACGAGAAGUUUCCUCAUAAGCACUGUGGACAAAAAAAGCGGGGAAGACAGCAAGAUUUAUUGGAAGAUACUUACAGGGGAAAUUAAUAUUUUG2000000006ACUAUUUUUAUAUAUAAAGAAGAACUCAAAAAAUUAUGUUCAAAUUUGUACAUUAAUGAAAUAAUGGA2000000006ACUUGUGGUUAGAGGGAAAGAACCACUGUACAGAAUAUAAAGGAG2000000006ACUGUUGAAUUCAUACCAUAUAAAACUUGUUAGG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 168 2080 2205 2273 2318
Modification Positions m6A m6A m6A m6A m6A
Genomic Coordinates 5:65926734:+ 5:66078480:+ 5:66078605:+ 5:66078673:+ 5:66078718:+
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
Q36pf44ZRvxu
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
4HMi5ykupT9V
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
ArijeGVTwYBw
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
8cMbzB4aD5Se
WiQcrNTGZHPT
6UuHp6YApVKv
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
ArijeGVTwYBw
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G