General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000425647
Gene ID:	ENSG00000136861
Gene Name:	CDK5RAP2
Sequence (UNICHARACTER ENCODING)	AAUAUGUAUCGUCUCCCUGCCACCCAGGAGGUGGUGACGCAGCUGCAGAGCCAGAUCUUGGAGCUGCAGGGGGAGCUGAAGGAGUUUAAAACUUGUAAUAAGCAACUUCACCAAAAGUUAAUUCUGGCUGAAGCAGUGAUGGAGGGGAGGCCAACGCCCGACAAAACGUUGCUGAAUGACUCUGAGAUUUGCCCACCUGAUGACCUUGCCAGCUUGCCAUCAUGCAAAGAAAAUCCUGAAGAUGUUCUGAGCCCAACUUCAGUAGCUACUUACCUGAGUUCCAAGAGUCAGCCUUCUGCUAAAGUCAGUGUGAUGGGGЖCUGAUCAGUCAGAGAGCAUUAAUACCUCAAAUGAGACAGAAUACUUAAAACAGAAAAUCCAUGACUUGGAAЖCUGAGCUGGAAGGCUACCAGAAUUUCAUAUUUCAGCUUCAAAAGCACUCCCAGUGCAGUGAGGCCAUAAUUACAGUUUUGUGUGGGЖCAGAAGGGGCCCAGGAUGGCUUGAGCAAGCCCAAGAAUGGUUCUGAUGGGGAAGAAAUGACCUUUUCAAGUUUGCACCAAGUGCGAUACGUGAAACACGUGAAAAUCCUCGGUCCGCUGGCCCCAGAGAUGAUUGACAGCAGGGUGCUGGAGAACCUCAAACAGCAGCUGGAGGAACAGGAAUACAAGCUGCAGAAGGAGCAGAAUUUGAACAUGCAACUUUUCAGUGAGAUCCAUAAUCUGCAGAAUAAGUUCAGAGAUCUCUCACCUCCCAGAUACGAUUCAUUAGUUCAGUCCCAAGCCAGGGAGCUCUCCCUUCAACGGCAGCAGAUUAAGGAUGGCCAUGGCAUCUGUGUCAUCUCCCGUCAACACAUGAACACCAUGAUUAAGGCAUUUGAGGAGUUGCUGCAGGCCAGUGAUGUGGAUUACUGUGUGGCCGAGGGUUUCCAGGAACAGCUGAAUCAAUGUGCUGAGCUGCUGGAGAAAUUGGAAAAGCUAUUUCUCAACGGAAAAUCAGUUGGAGUGGAAAUGAACACCCAGAAUGAACUGAUGGAGAGGAUUGAGGAAGACAACUUAACCUACCAACAUCUUCUGCCUGAAUCUCCUGAGCCUUCAGCCUCUCAUGCGCUCUCUGAUUAUGAAACAUCUGAAAAGUCCUUCUUCUCACGAGACCAGAAGCAAGAUAAUGAGACAGAGAAGACUUCAGUUAUGGUGAACAGUUUUUCUCAAGACUUACUAAUGGAACACAUACAGGAAAUUCGAACUUUGAGAAAGCGUUUAGAAGAAUCUAUUAAAACAAAUGAGAAGCUACGGAAACAGUUGGAACGGCAAGGAUCUGAAUUUGUUCAAGGUUCUACAAGCAUUUUUGCUUCUGGUUCAGAGCUUCAUAGUUCUCUAACAUCAGAAAUUCAUUUCUUGAGGAAGCAGAACCAGGCCCUCAAUGCAAUGCUCAUUAAAGGAUCCAGAGAUAAACAGAAGGAGAAUGACAAAUUACGAGAGUCCCUCUCCAGGAAGACCGUGAGCCUGGAGCACCUUCAGCGGGAGUAUGCCAGCGUGAAGGAAGAAAAUGAAAGGCUGCAGAAAGAAGGCAGCGAGAAGGAGAGACACAACCAGCAGCUGAUCCAGGAGGUCCGCUGCAGCGGCCAGGAGCUGAGCAGGGUGCAGGAGGAGGUGAAGUUGAGGCAGCAGCUGCUCUCACAGAAUGACAAGCUAUUGCAGUCUCUCCGAGUGGAGCUGAAGGCGUAUGAGAAGCUGGAUGAAGAGCACAGGAGACUGAGAGAGGCGUCGGGAGAAGGCUGGAAGGGGCAGGAUCCUUUCAGGGACCUGCACAGCCUCCUGAUGGAGAUCCAGGCUCUGCGCUUGCAACUAGAAAGGAGCAUCGAAACCAGCAGCACUCUGCAGAGCAGGCUCAAGGAACAGCUGGCAAGGGGGGCAGAGAAGGCACAGGAAGGAGCCCUCACUCUGGCUGUCCAAGCCGUGUCCAUCCCUGAGGUGCCCCUUCAGCCUGACAAACACGAUGGUGACAAAUAUCCCAUGGAAAGUGAUAAUUCAUUUGAUCUGUUUGAUUCCUCCCAGGCAGUGACACCAAAAUCAGUUUCAGAGACUCCUCCACUCUCUGGGAAUGACACGGACUCCCUCUCCUGCGACAGUGGCAGUUCGGCAACUAGCACUCCGUGUGUGUCCCGCCUGGUCACUGGCCACCACCUGUGGGCCAGCAAGAAUGGCCGCCAUGUCCUGGGCCUGAUUGAGGACUAUGAGGCCCUGCUCAAЖCAGAUCAGCCAGGGACAGAGGCUCCUUGCUGAAAUGGACAUUCAAACCCAAGAGGCUCCCAGCUCCACAAGUCAAGAGCUGGGAACAAAGGGUCCACACCCAGCACCACUGAGCAAGUUUGUGAGCAGUGUGAGCACGGCCAAGCUGACCCUGGAAGAGGCCUACAGGCGGCUGAAGCUUCUCUGGAGAGUCUCACUCCCCGAGGAUGGCCAGUGCCCCCUUCACUGUGAGCAGAUUGGAGAAAUGAAGGCAGAGGUCACCAAЖCUACAUAAAAAAUUGUUUGAACAAGAAAAGAAGUUGCAAAACACCAUGAAGCUUUUGCAGCUGAGCAAGCGCCAGGAAAAAGUCAUCUUUGAUCAAUUGGUCGUAACCCACAAAAUCCUUCGGAAGGCCAGAGGAAACCUGGAGCUUAGGCCUGGGGGAGCCCAPCCAGGAACAUGCAGUCCCAGCAGЖCCAGGCUCCUGAGAAGAACUUUCAGCCAAUAAAGCUUGUGCUUCCCC
Sequence (SHORT NAMES ENCODING)	AAUAUGUAUCGUCUCCCUGCCACCCAGGAGGUGGUGACGCAGCUGCAGAGCCAGAUCUUGGAGCUGCAGGGGGAGCUGAAGGAGUUUAAAACUUGUAAUAAGCAACUUCACCAAAAGUUAAUUCUGGCUGAAGCAGUGAUGGAGGGGAGGCCAACGCCCGACAAAACGUUGCUGAAUGACUCUGAGAUUUGCCCACCUGAUGACCUUGCCAGCUUGCCAUCAUGCAAAGAAAAUCCUGAAGAUGUUCUGAGCCCAACUUCAGUAGCUACUUACCUGAGUUCCAAGAGUCAGCCUUCUGCUAAAGUCAGUGUGAUGGGGm6ACUGAUCAGUCAGAGAGCAUUAAUACCUCAAAUGAGACAGAAUACUUAAAACAGAAAAUCCAUGACUUGGAAm6ACUGAGCUGGAAGGCUACCAGAAUUUCAUAUUUCAGCUUCAAAAGCACUCCCAGUGCAGUGAGGCCAUAAUUACAGUUUUGUGUGGGm6ACAGAAGGGGCCCAGGAUGGCUUGAGCAAGCCCAAGAAUGGUUCUGAUGGGGAAGAAAUGACCUUUUCAAGUUUGCACCAAGUGCGAUACGUGAAACACGUGAAAAUCCUCGGUCCGCUGGCCCCAGAGAUGAUUGACAGCAGGGUGCUGGAGAACCUCAAACAGCAGCUGGAGGAACAGGAAUACAAGCUGCAGAAGGAGCAGAAUUUGAACAUGCAACUUUUCAGUGAGAUCCAUAAUCUGCAGAAUAAGUUCAGAGAUCUCUCACCUCCCAGAUACGAUUCAUUAGUUCAGUCCCAAGCCAGGGAGCUCUCCCUUCAACGGCAGCAGAUUAAGGAUGGCCAUGGCAUCUGUGUCAUCUCCCGUCAACACAUGAACACCAUGAUUAAGGCAUUUGAGGAGUUGCUGCAGGCCAGUGAUGUGGAUUACUGUGUGGCCGAGGGUUUCCAGGAACAGCUGAAUCAAUGUGCUGAGCUGCUGGAGAAAUUGGAAAAGCUAUUUCUCAACGGAAAAUCAGUUGGAGUGGAAAUGAACACCCAGAAUGAACUGAUGGAGAGGAUUGAGGAAGACAACUUAACCUACCAACAUCUUCUGCCUGAAUCUCCUGAGCCUUCAGCCUCUCAUGCGCUCUCUGAUUAUGAAACAUCUGAAAAGUCCUUCUUCUCACGAGACCAGAAGCAAGAUAAUGAGACAGAGAAGACUUCAGUUAUGGUGAACAGUUUUUCUCAAGACUUACUAAUGGAACACAUACAGGAAAUUCGAACUUUGAGAAAGCGUUUAGAAGAAUCUAUUAAAACAAAUGAGAAGCUACGGAAACAGUUGGAACGGCAAGGAUCUGAAUUUGUUCAAGGUUCUACAAGCAUUUUUGCUUCUGGUUCAGAGCUUCAUAGUUCUCUAACAUCAGAAAUUCAUUUCUUGAGGAAGCAGAACCAGGCCCUCAAUGCAAUGCUCAUUAAAGGAUCCAGAGAUAAACAGAAGGAGAAUGACAAAUUACGAGAGUCCCUCUCCAGGAAGACCGUGAGCCUGGAGCACCUUCAGCGGGAGUAUGCCAGCGUGAAGGAAGAAAAUGAAAGGCUGCAGAAAGAAGGCAGCGAGAAGGAGAGACACAACCAGCAGCUGAUCCAGGAGGUCCGCUGCAGCGGCCAGGAGCUGAGCAGGGUGCAGGAGGAGGUGAAGUUGAGGCAGCAGCUGCUCUCACAGAAUGACAAGCUAUUGCAGUCUCUCCGAGUGGAGCUGAAGGCGUAUGAGAAGCUGGAUGAAGAGCACAGGAGACUGAGAGAGGCGUCGGGAGAAGGCUGGAAGGGGCAGGAUCCUUUCAGGGACCUGCACAGCCUCCUGAUGGAGAUCCAGGCUCUGCGCUUGCAACUAGAAAGGAGCAUCGAAACCAGCAGCACUCUGCAGAGCAGGCUCAAGGAACAGCUGGCAAGGGGGGCAGAGAAGGCACAGGAAGGAGCCCUCACUCUGGCUGUCCAAGCCGUGUCCAUCCCUGAGGUGCCCCUUCAGCCUGACAAACACGAUGGUGACAAAUAUCCCAUGGAAAGUGAUAAUUCAUUUGAUCUGUUUGAUUCCUCCCAGGCAGUGACACCAAAAUCAGUUUCAGAGACUCCUCCACUCUCUGGGAAUGACACGGACUCCCUCUCCUGCGACAGUGGCAGUUCGGCAACUAGCACUCCGUGUGUGUCCCGCCUGGUCACUGGCCACCACCUGUGGGCCAGCAAGAAUGGCCGCCAUGUCCUGGGCCUGAUUGAGGACUAUGAGGCCCUGCUCAAm6ACAGAUCAGCCAGGGACAGAGGCUCCUUGCUGAAAUGGACAUUCAAACCCAAGAGGCUCCCAGCUCCACAAGUCAAGAGCUGGGAACAAAGGGUCCACACCCAGCACCACUGAGCAAGUUUGUGAGCAGUGUGAGCACGGCCAAGCUGACCCUGGAAGAGGCCUACAGGCGGCUGAAGCUUCUCUGGAGAGUCUCACUCCCCGAGGAUGGCCAGUGCCCCCUUCACUGUGAGCAGAUUGGAGAAAUGAAGGCAGAGGUCACCAAm6ACUACAUAAAAAAUUGUUUGAACAAGAAAAGAAGUUGCAAAACACCAUGAAGCUUUUGCAGCUGAGCAAGCGCCAGGAAAAAGUCAUCUUUGAUCAAUUGGUCGUAACCCACAAAAUCCUUCGGAAGGCCAGAGGAAACCUGGAGCUUAGGCCUGGGGGAGCCCAYCCAGGAACAUGCAGUCCCAGCAGm6ACCAGGCUCCUGAGAAGAACUUUCAGCCAAUAAAGCUUGUGCUUCCCC
Sequence (MODOMICS CODE ENCODING)	AAUAUGUAUCGUCUCCCUGCCACCCAGGAGGUGGUGACGCAGCUGCAGAGCCAGAUCUUGGAGCUGCAGGGGGAGCUGAAGGAGUUUAAAACUUGUAAUAAGCAACUUCACCAAAAGUUAAUUCUGGCUGAAGCAGUGAUGGAGGGGAGGCCAACGCCCGACAAAACGUUGCUGAAUGACUCUGAGAUUUGCCCACCUGAUGACCUUGCCAGCUUGCCAUCAUGCAAAGAAAAUCCUGAAGAUGUUCUGAGCCCAACUUCAGUAGCUACUUACCUGAGUUCCAAGAGUCAGCCUUCUGCUAAAGUCAGUGUGAUGGGG2000000006ACUGAUCAGUCAGAGAGCAUUAAUACCUCAAAUGAGACAGAAUACUUAAAACAGAAAAUCCAUGACUUGGAA2000000006ACUGAGCUGGAAGGCUACCAGAAUUUCAUAUUUCAGCUUCAAAAGCACUCCCAGUGCAGUGAGGCCAUAAUUACAGUUUUGUGUGGG2000000006ACAGAAGGGGCCCAGGAUGGCUUGAGCAAGCCCAAGAAUGGUUCUGAUGGGGAAGAAAUGACCUUUUCAAGUUUGCACCAAGUGCGAUACGUGAAACACGUGAAAAUCCUCGGUCCGCUGGCCCCAGAGAUGAUUGACAGCAGGGUGCUGGAGAACCUCAAACAGCAGCUGGAGGAACAGGAAUACAAGCUGCAGAAGGAGCAGAAUUUGAACAUGCAACUUUUCAGUGAGAUCCAUAAUCUGCAGAAUAAGUUCAGAGAUCUCUCACCUCCCAGAUACGAUUCAUUAGUUCAGUCCCAAGCCAGGGAGCUCUCCCUUCAACGGCAGCAGAUUAAGGAUGGCCAUGGCAUCUGUGUCAUCUCCCGUCAACACAUGAACACCAUGAUUAAGGCAUUUGAGGAGUUGCUGCAGGCCAGUGAUGUGGAUUACUGUGUGGCCGAGGGUUUCCAGGAACAGCUGAAUCAAUGUGCUGAGCUGCUGGAGAAAUUGGAAAAGCUAUUUCUCAACGGAAAAUCAGUUGGAGUGGAAAUGAACACCCAGAAUGAACUGAUGGAGAGGAUUGAGGAAGACAACUUAACCUACCAACAUCUUCUGCCUGAAUCUCCUGAGCCUUCAGCCUCUCAUGCGCUCUCUGAUUAUGAAACAUCUGAAAAGUCCUUCUUCUCACGAGACCAGAAGCAAGAUAAUGAGACAGAGAAGACUUCAGUUAUGGUGAACAGUUUUUCUCAAGACUUACUAAUGGAACACAUACAGGAAAUUCGAACUUUGAGAAAGCGUUUAGAAGAAUCUAUUAAAACAAAUGAGAAGCUACGGAAACAGUUGGAACGGCAAGGAUCUGAAUUUGUUCAAGGUUCUACAAGCAUUUUUGCUUCUGGUUCAGAGCUUCAUAGUUCUCUAACAUCAGAAAUUCAUUUCUUGAGGAAGCAGAACCAGGCCCUCAAUGCAAUGCUCAUUAAAGGAUCCAGAGAUAAACAGAAGGAGAAUGACAAAUUACGAGAGUCCCUCUCCAGGAAGACCGUGAGCCUGGAGCACCUUCAGCGGGAGUAUGCCAGCGUGAAGGAAGAAAAUGAAAGGCUGCAGAAAGAAGGCAGCGAGAAGGAGAGACACAACCAGCAGCUGAUCCAGGAGGUCCGCUGCAGCGGCCAGGAGCUGAGCAGGGUGCAGGAGGAGGUGAAGUUGAGGCAGCAGCUGCUCUCACAGAAUGACAAGCUAUUGCAGUCUCUCCGAGUGGAGCUGAAGGCGUAUGAGAAGCUGGAUGAAGAGCACAGGAGACUGAGAGAGGCGUCGGGAGAAGGCUGGAAGGGGCAGGAUCCUUUCAGGGACCUGCACAGCCUCCUGAUGGAGAUCCAGGCUCUGCGCUUGCAACUAGAAAGGAGCAUCGAAACCAGCAGCACUCUGCAGAGCAGGCUCAAGGAACAGCUGGCAAGGGGGGCAGAGAAGGCACAGGAAGGAGCCCUCACUCUGGCUGUCCAAGCCGUGUCCAUCCCUGAGGUGCCCCUUCAGCCUGACAAACACGAUGGUGACAAAUAUCCCAUGGAAAGUGAUAAUUCAUUUGAUCUGUUUGAUUCCUCCCAGGCAGUGACACCAAAAUCAGUUUCAGAGACUCCUCCACUCUCUGGGAAUGACACGGACUCCCUCUCCUGCGACAGUGGCAGUUCGGCAACUAGCACUCCGUGUGUGUCCCGCCUGGUCACUGGCCACCACCUGUGGGCCAGCAAGAAUGGCCGCCAUGUCCUGGGCCUGAUUGAGGACUAUGAGGCCCUGCUCAA2000000006ACAGAUCAGCCAGGGACAGAGGCUCCUUGCUGAAAUGGACAUUCAAACCCAAGAGGCUCCCAGCUCCACAAGUCAAGAGCUGGGAACAAAGGGUCCACACCCAGCACCACUGAGCAAGUUUGUGAGCAGUGUGAGCACGGCCAAGCUGACCCUGGAAGAGGCCUACAGGCGGCUGAAGCUUCUCUGGAGAGUCUCACUCCCCGAGGAUGGCCAGUGCCCCCUUCACUGUGAGCAGAUUGGAGAAAUGAAGGCAGAGGUCACCAA2000000006ACUACAUAAAAAAUUGUUUGAACAAGAAAAGAAGUUGCAAAACACCAUGAAGCUUUUGCAGCUGAGCAAGCGCCAGGAAAAAGUCAUCUUUGAUCAAUUGGUCGUAACCCACAAAAUCCUUCGGAAGGCCAGAGGAAACCUGGAGCUUAGGCCUGGGGGAGCCCA2000000009UCCAGGAACAUGCAGUCCCAGCAG2000000006ACCAGGCUCCUGAGAAGAACUUUCAGCCAAUAAAGCUUGUGCUUCCCC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	319	391	478	2247	2511	2676	2700
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A
Genomic Coordinates	9:120439832:-	9:120439760:-	9:120439673:-	9:120402896:-	9:120394609:-	9:120389272:-	9:120389248:-
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 Lny8GcCeVGc9 UKen6WEino9G	6UuHp6YApVKv jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda	BtsJQJ3DteUq dknfVe6BK8aP kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp	BtsJQJ3DteUq dknfVe6BK8aP kx7BHU7ZycYE oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp