General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000393370
Gene ID:	ENSG00000119383
Gene Name:	PTPA
Sequence (UNICHARACTER ENCODING)	ACCGACAUGGCGGCCGUCUUCGCUGUGGUGACUPUAACUCUCGGUUUUCGGUUAUAGCCGGCCGGCGCUCACUUGUCUUCAGGAAGCUCGGAGCCUUUGGUGGAGCCGGGGAGAGGAAGGGUGGGUGCAAGAGUGAAAGGCGAGAGGGGACUGCAAGCAUCCGGGUCGGCUCCUGGCCGGAGCAAGAUGGCUGAGGGCGAGCGGCAGCCGCCGCCAGAUUCUUCAGAGGAGGCCCCUCCAGCCACUCAGAACUUCAUCAUUCCAAAAAAGGAGAUCCACACAGUUCCAGACAUGGGCAAAUGGAAGCGUUCUCAGGCAUACGCUGACUACAUCGGAUUCAPCCUUACCCUCAACGAAGGUGUGAAGGGGAAGAAGCUGACCUUCGAGUACAGAGUCUCCGAGGCCAUUGAGAAACUAGUCGCUCUUCUCAACACGCUGGЖCAGGUGGAUUGAUGAGACUCCUCCAGUGGACCAGCCCUCUCGGUUUGGGAAUAAGGCAUACAGGACCUGGUAUGCCAAACUUGAUGAGGAAGCAGAAAACUUGGUGGCCACAGUGGUCCCUACCCAUCUGGCAGCUGCUGUGCCUGAGGUGGCUGUUUACCUAAAGGAGUCAGUGGGGAACUCCACGCGCAUUGACUACGGCACAGGGCAUGAGGCAGCCUUCGCUGCUUUCCUCUGCUGUCUCUGCAAGAUUGGGGUGCUCCGGGUGGAUGACCAAAUAGCUAUUGUCUUCAAGGUGUUCAAUCGGUACCUUGAGGUUAUGCGGAAACUCCAGAAAACAUACAGGAUGGAGCCAGCCGGCAGCCAGGGAGUGUGGGGUCUGGAUGACUUCCAGUUUCUGCCCUUCAUCUGGGGCAGUUCGCAGCUGAUAGЖCCACCCAUACCUGGAGCCCAGACACUUUGUGGAUGAGAAGGCCGUGAAUGAGAACCACAAGGACUACAUGUUCCUGGAGUGUAUCCUGUUUAUUACCGAGAUGAAGACUGGCCCAUUUGCAGAGCACUCCAACCAGCUGUGGAACAUCAGCGCCGUCCCUUCCUGGUCCAʍAGUGAACCAGGGUCUCAPCCGCAUGUAUAAGGCCGAGUGCCUGGAGAAGUUCCCUGUGAUCCAGCACUUCAAGUUCGGGAGCCUGCUGCCCAPCCAUCCUGUCACGUCGGGCUAGGAGGGGCCAAGCCGAAGAGCCACCCAGGCCACAGUUCCUGUGCCUGCCUUCCCCЖCCCCAGCAGUGGCCCCUCCCCAPCCCCUCCCUCUGUUCGUCCCGUUUGAUGAGAGGCUGUUUACUGGGGUGGGGUGGCGAGAUGGGCUUGAGGGGGCUCAGAGCAPAAGGCUUCAGGGCCCAAGUUGGGAGAAGUGACCAAAGUGUAGCCAGUUUUCUGAGUUCCCGUGUGCUAGACUGGCCAGAAGAGAGGGUCUGGGGCCUGGUCACUCGGCCACUCUCUCCUGUUUCUGGCCUCUUCUCCCUUCACUCCCGUCCAGUCUGGUUUUGAGAGCAGGGGCUGUUCUGCAGCACCGCAGGGAAGGGAGGAGAGAUACCUGCUGCUUCCAUUGCUUUUCCCUUCCUGGAGUCGAUGCCUUUCUAAGGGUUGGAGCUGCUCCUUGCAGGGGCGGGUCAGUUUCCCAGGCCAUGCCGGGGUGGCCAUCUAUGGUAGGGCUGGAAGCUGAGGCUGGCCGCCAGCUGUGGGCUGGGGUGGGGUGGGUGGGGUCGGGUGGUGGAGAGGCCUUAGCUGUCCUGGCUGGUGCCCCUCCCAGGCUCCUUUUCACCCUGCCCCCUGGGCCUGAGGCCCCCUGUGUCCAAGCCUCCCCCUGGCUCUUCAGUUCUCUAGCCCUUGGCUCUGCUGGGUUUCCUGACUGUAGCCACAUCUCUCCCGCUCCCUAAGGGUAACCUAGCCAAUGGAAGCUGCCCUUUGGGUAGGUGCUGGGCUCCUGGGAGGGCCCAGAUGAUGGGGUGAGGCAUGUCUUUCCAGAACUUUCCCUGGCAGGGAGGGGAUGGCAGAAACUCAGGGAGGGGCUUGGGGCCCAUUGUAUCUGGAGAGCCUGGAUUCCUCUUGGCAGUCUUAGGCCCGGCCACUUCUGCUACCUUUGCGCUGCUGUGAGCCUCACCCUGGGCCCCUGGGCCCUGCUUCUCUGCUCCCCUGGGUGAUGGGUGGGCCCAGAAGGUGGCAGUCCCACACCUUGUCCUCCCACCPCCCUGAACUGUCCAUUGCUUUUAUAGGGUGAGGUAAGAGACAGCCUCCCAAGCCCAGGCUUUGGCACUCAGAAUGGGCCCAGUGGGGGCUGGGCAGGCCCAUUGAGGGCCACCGCCGAGGUUUCUCCUAGGGCUGUUCCUGGGCCUGGCUCUUACAGGCUCGUCCCCCAGGCCUGCCCUUCUCCACUGCCCCCUCCUGUGUCUGGGUCCACACACCCUUCAGGAAGGGGGAGCACUGAGAAGCACAGCACAGGGGCUCAGCCUGGGAUCCGGUGAUGGUCUGGGCAGAGGCUGGGUCAGGAGUCCCAAAGGUCAGUGACAGUUUCUCAGAAGAGGCCCAGCGUCCACCUCUCUCCCAGGGCCAGACAGCCCUUCCUGGCUCCCCCAUCCCCCUAUGGGCUCCCAGCCCCUUGCACCCUCAUUGCUGUUCAGAUUAAAGCCUCUGUUUUGCACCUGUCA
Sequence (SHORT NAMES ENCODING)	ACCGACAUGGCGGCCGUCUUCGCUGUGGUGACUYUAACUCUCGGUUUUCGGUUAUAGCCGGCCGGCGCUCACUUGUCUUCAGGAAGCUCGGAGCCUUUGGUGGAGCCGGGGAGAGGAAGGGUGGGUGCAAGAGUGAAAGGCGAGAGGGGACUGCAAGCAUCCGGGUCGGCUCCUGGCCGGAGCAAGAUGGCUGAGGGCGAGCGGCAGCCGCCGCCAGAUUCUUCAGAGGAGGCCCCUCCAGCCACUCAGAACUUCAUCAUUCCAAAAAAGGAGAUCCACACAGUUCCAGACAUGGGCAAAUGGAAGCGUUCUCAGGCAUACGCUGACUACAUCGGAUUCAYCCUUACCCUCAACGAAGGUGUGAAGGGGAAGAAGCUGACCUUCGAGUACAGAGUCUCCGAGGCCAUUGAGAAACUAGUCGCUCUUCUCAACACGCUGGm6ACAGGUGGAUUGAUGAGACUCCUCCAGUGGACCAGCCCUCUCGGUUUGGGAAUAAGGCAUACAGGACCUGGUAUGCCAAACUUGAUGAGGAAGCAGAAAACUUGGUGGCCACAGUGGUCCCUACCCAUCUGGCAGCUGCUGUGCCUGAGGUGGCUGUUUACCUAAAGGAGUCAGUGGGGAACUCCACGCGCAUUGACUACGGCACAGGGCAUGAGGCAGCCUUCGCUGCUUUCCUCUGCUGUCUCUGCAAGAUUGGGGUGCUCCGGGUGGAUGACCAAAUAGCUAUUGUCUUCAAGGUGUUCAAUCGGUACCUUGAGGUUAUGCGGAAACUCCAGAAAACAUACAGGAUGGAGCCAGCCGGCAGCCAGGGAGUGUGGGGUCUGGAUGACUUCCAGUUUCUGCCCUUCAUCUGGGGCAGUUCGCAGCUGAUAGm6ACCACCCAUACCUGGAGCCCAGACACUUUGUGGAUGAGAAGGCCGUGAAUGAGAACCACAAGGACUACAUGUUCCUGGAGUGUAUCCUGUUUAUUACCGAGAUGAAGACUGGCCCAUUUGCAGAGCACUCCAACCAGCUGUGGAACAUCAGCGCCGUCCCUUCCUGGUCCAAmAGUGAACCAGGGUCUCAYCCGCAUGUAUAAGGCCGAGUGCCUGGAGAAGUUCCCUGUGAUCCAGCACUUCAAGUUCGGGAGCCUGCUGCCCAYCCAUCCUGUCACGUCGGGCUAGGAGGGGCCAAGCCGAAGAGCCACCCAGGCCACAGUUCCUGUGCCUGCCUUCCCCm6ACCCCAGCAGUGGCCCCUCCCCAYCCCCUCCCUCUGUUCGUCCCGUUUGAUGAGAGGCUGUUUACUGGGGUGGGGUGGCGAGAUGGGCUUGAGGGGGCUCAGAGCAYAAGGCUUCAGGGCCCAAGUUGGGAGAAGUGACCAAAGUGUAGCCAGUUUUCUGAGUUCCCGUGUGCUAGACUGGCCAGAAGAGAGGGUCUGGGGCCUGGUCACUCGGCCACUCUCUCCUGUUUCUGGCCUCUUCUCCCUUCACUCCCGUCCAGUCUGGUUUUGAGAGCAGGGGCUGUUCUGCAGCACCGCAGGGAAGGGAGGAGAGAUACCUGCUGCUUCCAUUGCUUUUCCCUUCCUGGAGUCGAUGCCUUUCUAAGGGUUGGAGCUGCUCCUUGCAGGGGCGGGUCAGUUUCCCAGGCCAUGCCGGGGUGGCCAUCUAUGGUAGGGCUGGAAGCUGAGGCUGGCCGCCAGCUGUGGGCUGGGGUGGGGUGGGUGGGGUCGGGUGGUGGAGAGGCCUUAGCUGUCCUGGCUGGUGCCCCUCCCAGGCUCCUUUUCACCCUGCCCCCUGGGCCUGAGGCCCCCUGUGUCCAAGCCUCCCCCUGGCUCUUCAGUUCUCUAGCCCUUGGCUCUGCUGGGUUUCCUGACUGUAGCCACAUCUCUCCCGCUCCCUAAGGGUAACCUAGCCAAUGGAAGCUGCCCUUUGGGUAGGUGCUGGGCUCCUGGGAGGGCCCAGAUGAUGGGGUGAGGCAUGUCUUUCCAGAACUUUCCCUGGCAGGGAGGGGAUGGCAGAAACUCAGGGAGGGGCUUGGGGCCCAUUGUAUCUGGAGAGCCUGGAUUCCUCUUGGCAGUCUUAGGCCCGGCCACUUCUGCUACCUUUGCGCUGCUGUGAGCCUCACCCUGGGCCCCUGGGCCCUGCUUCUCUGCUCCCCUGGGUGAUGGGUGGGCCCAGAAGGUGGCAGUCCCACACCUUGUCCUCCCACCYCCCUGAACUGUCCAUUGCUUUUAUAGGGUGAGGUAAGAGACAGCCUCCCAAGCCCAGGCUUUGGCACUCAGAAUGGGCCCAGUGGGGGCUGGGCAGGCCCAUUGAGGGCCACCGCCGAGGUUUCUCCUAGGGCUGUUCCUGGGCCUGGCUCUUACAGGCUCGUCCCCCAGGCCUGCCCUUCUCCACUGCCCCCUCCUGUGUCUGGGUCCACACACCCUUCAGGAAGGGGGAGCACUGAGAAGCACAGCACAGGGGCUCAGCCUGGGAUCCGGUGAUGGUCUGGGCAGAGGCUGGGUCAGGAGUCCCAAAGGUCAGUGACAGUUUCUCAGAAGAGGCCCAGCGUCCACCUCUCUCCCAGGGCCAGACAGCCCUUCCUGGCUCCCCCAUCCCCCUAUGGGCUCCCAGCCCCUUGCACCCUCAUUGCUGUUCAGAUUAAAGCCUCUGUUUUGCACCUGUCA
Sequence (MODOMICS CODE ENCODING)	ACCGACAUGGCGGCCGUCUUCGCUGUGGUGACU2000000009UUAACUCUCGGUUUUCGGUUAUAGCCGGCCGGCGCUCACUUGUCUUCAGGAAGCUCGGAGCCUUUGGUGGAGCCGGGGAGAGGAAGGGUGGGUGCAAGAGUGAAAGGCGAGAGGGGACUGCAAGCAUCCGGGUCGGCUCCUGGCCGGAGCAAGAUGGCUGAGGGCGAGCGGCAGCCGCCGCCAGAUUCUUCAGAGGAGGCCCCUCCAGCCACUCAGAACUUCAUCAUUCCAAAAAAGGAGAUCCACACAGUUCCAGACAUGGGCAAAUGGAAGCGUUCUCAGGCAUACGCUGACUACAUCGGAUUCA2000000009UCCUUACCCUCAACGAAGGUGUGAAGGGGAAGAAGCUGACCUUCGAGUACAGAGUCUCCGAGGCCAUUGAGAAACUAGUCGCUCUUCUCAACACGCUGG2000000006ACAGGUGGAUUGAUGAGACUCCUCCAGUGGACCAGCCCUCUCGGUUUGGGAAUAAGGCAUACAGGACCUGGUAUGCCAAACUUGAUGAGGAAGCAGAAAACUUGGUGGCCACAGUGGUCCCUACCCAUCUGGCAGCUGCUGUGCCUGAGGUGGCUGUUUACCUAAAGGAGUCAGUGGGGAACUCCACGCGCAUUGACUACGGCACAGGGCAUGAGGCAGCCUUCGCUGCUUUCCUCUGCUGUCUCUGCAAGAUUGGGGUGCUCCGGGUGGAUGACCAAAUAGCUAUUGUCUUCAAGGUGUUCAAUCGGUACCUUGAGGUUAUGCGGAAACUCCAGAAAACAUACAGGAUGGAGCCAGCCGGCAGCCAGGGAGUGUGGGGUCUGGAUGACUUCCAGUUUCUGCCCUUCAUCUGGGGCAGUUCGCAGCUGAUAG2000000006ACCACCCAUACCUGGAGCCCAGACACUUUGUGGAUGAGAAGGCCGUGAAUGAGAACCACAAGGACUACAUGUUCCUGGAGUGUAUCCUGUUUAUUACCGAGAUGAAGACUGGCCCAUUUGCAGAGCACUCCAACCAGCUGUGGAACAUCAGCGCCGUCCCUUCCUGGUCCA2000000090AAGUGAACCAGGGUCUCA2000000009UCCGCAUGUAUAAGGCCGAGUGCCUGGAGAAGUUCCCUGUGAUCCAGCACUUCAAGUUCGGGAGCCUGCUGCCCA2000000009UCCAUCCUGUCACGUCGGGCUAGGAGGGGCCAAGCCGAAGAGCCACCCAGGCCACAGUUCCUGUGCCUGCCUUCCCC2000000006ACCCCAGCAGUGGCCCCUCCCCA2000000009UCCCCUCCCUCUGUUCGUCCCGUUUGAUGAGAGGCUGUUUACUGGGGUGGGGUGGCGAGAUGGGCUUGAGGGGGCUCAGAGCA2000000009UAAGGCUUCAGGGCCCAAGUUGGGAGAAGUGACCAAAGUGUAGCCAGUUUUCUGAGUUCCCGUGUGCUAGACUGGCCAGAAGAGAGGGUCUGGGGCCUGGUCACUCGGCCACUCUCUCCUGUUUCUGGCCUCUUCUCCCUUCACUCCCGUCCAGUCUGGUUUUGAGAGCAGGGGCUGUUCUGCAGCACCGCAGGGAAGGGAGGAGAGAUACCUGCUGCUUCCAUUGCUUUUCCCUUCCUGGAGUCGAUGCCUUUCUAAGGGUUGGAGCUGCUCCUUGCAGGGGCGGGUCAGUUUCCCAGGCCAUGCCGGGGUGGCCAUCUAUGGUAGGGCUGGAAGCUGAGGCUGGCCGCCAGCUGUGGGCUGGGGUGGGGUGGGUGGGGUCGGGUGGUGGAGAGGCCUUAGCUGUCCUGGCUGGUGCCCCUCCCAGGCUCCUUUUCACCCUGCCCCCUGGGCCUGAGGCCCCCUGUGUCCAAGCCUCCCCCUGGCUCUUCAGUUCUCUAGCCCUUGGCUCUGCUGGGUUUCCUGACUGUAGCCACAUCUCUCCCGCUCCCUAAGGGUAACCUAGCCAAUGGAAGCUGCCCUUUGGGUAGGUGCUGGGCUCCUGGGAGGGCCCAGAUGAUGGGGUGAGGCAUGUCUUUCCAGAACUUUCCCUGGCAGGGAGGGGAUGGCAGAAACUCAGGGAGGGGCUUGGGGCCCAUUGUAUCUGGAGAGCCUGGAUUCCUCUUGGCAGUCUUAGGCCCGGCCACUUCUGCUACCUUUGCGCUGCUGUGAGCCUCACCCUGGGCCCCUGGGCCCUGCUUCUCUGCUCCCCUGGGUGAUGGGUGGGCCCAGAAGGUGGCAGUCCCACACCUUGUCCUCCCACC2000000009UCCCUGAACUGUCCAUUGCUUUUAUAGGGUGAGGUAAGAGACAGCCUCCCAAGCCCAGGCUUUGGCACUCAGAAUGGGCCCAGUGGGGGCUGGGCAGGCCCAUUGAGGGCCACCGCCGAGGUUUCUCCUAGGGCUGUUCCUGGGCCUGGCUCUUACAGGCUCGUCCCCCAGGCCUGCCCUUCUCCACUGCCCCCUCCUGUGUCUGGGUCCACACACCCUUCAGGAAGGGGGAGCACUGAGAAGCACAGCACAGGGGCUCAGCCUGGGAUCCGGUGAUGGUCUGGGCAGAGGCUGGGUCAGGAGUCCCAAAGGUCAGUGACAGUUUCUCAGAAGAGGCCCAGCGUCCACCUCUCUCCCAGGGCCAGACAGCCCUUCCUGGCUCCCCCAUCCCCCUAUGGGCUCCCAGCCCCUUGCACCCUCAUUGCUGUUCAGAUUAAAGCCUCUGUUUUGCACCUGUCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	34	341	440	872	1043	1061	1136	1213	1236	1319	2182
Modification Positions	Y	Y	m6A	m6A	Am	Y	Y	m6A	Y	Y	Y
Genomic Coordinates	9:129111448:+	9:129123077:+	9:129129022:+	9:129137592:+	9:129142515:+	9:129142533:+	9:129147442:+	9:129147519:+	9:129147542:+	9:129147625:+	9:129148488:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr S9vNeQQYrhac Yfn77uLS5tv8	ArijeGVTwYBw KTLz8piFYdwC BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr S9vNeQQYrhac Yfn77uLS5tv8	WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi XUkp6ghERQML	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8