General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000625521
Gene ID:	ENSG00000165006
Gene Name:	UBAP1
Sequence (UNICHARACTER ENCODING)	AGACGCCCAAAUGAGUGGGGCGGUGAGGGGAAGGAGGAGGGAAGUAGGACUUCAACAUGGCGGCUGCGGCACUGGCGGUGGCUACGGUGACGGCCUGGCCCGGAGCGGGCAGAGUUGGAGGUGGUGGCGUUCGCUCUCCCUAGGGGCUGUCGGGAGCUCAGCGGGGACCGAGCCUGGGAGGCCGGCCGGUGCCAGCACCUUUCGGCUUCUGAGACGGCGGCAGCAGCGGCAUUCAGGGACUUUCAGUUACCUUGAUGAUGUCCCAUUUAAGACAGGAGACAAAUUCAAAACACCAGCUAAAGUUGGUCUACCUAUUGGCUUCUCCUUGCCUGAUUGUUUGCAGGUUGUCAGAGAAGUACAGUAUGACUUCUCUUUGGAAAAGAAAACCAUUGAGUGGGCUGAAGAGAUUAAGAAAAUCGAAGAAGCCGAGCGGGAAGCAGAGUGCAAAAUUGCGGAAGCAGAAGCUAAAGUGAAUUCUAAGAGUGGCCCAGAGGGCGAUAGCAAAAUGAGCUUCUCCAAGACUCACAGUACAGCCACAAUGCCACCUCCUAUUAACCCCAPCCUCGCCAGCUUGCAGCACAACAGCAUCCUCACACCAACUCGGGUCAGCAGUAGUGCCACGAAACAGAAAGUUCUCAGCCCACCUCACAUAAAGGCGGAUUUCAAUCUUGCUGЖCUUUGAGUGUGAAGAAGACCCAUUUGAUAAUCUGGAGUUAAAAЖCUAUUGAUGAGAAGGAAGAGCUGAGAAAUAUUCUGGUAGGAACCACUGGЖCCCAUUAUGGCUCAGUUAUUGGЖCAAUAЖCUUGCCCAGGGGAGGCUCUGGGUCUGUGUUACAGGAUGAGGAGGUCCUGGCAPCCUUGGAACGGGCAACCCUAGAUUUCAAGCCUCUUCAUAAACCCAAUGGCUPUAUAACCUUACCACAGUUGGGCAACUGUGAAAAGAUGUCACUGUCUUCCAAAGUGUCCCUCCCCCCUAUACCUGCAGUAAGCAAUAUCAAAUCCCUGUCUUUCCCCAAЖCUUGЖCUCUGAUGACAGCAAUCAGAAGACAGCCAAGCUGGCGAGCACUUUCCAUAGCACAPCCUGCCUCCGCAAUGGCACGUUCCAGAAUUCCCUAAAGCCUUCCACCCAAAGCAGUGCCAGUGAGCUCAAUGGGCAUCACACUCUUGGGCUUUCAGCUUUGAЖCUUGGЖCAGUGGCACAGAGAUGCCAGCCCUGACAPCCUCCCAGAUGCCUUCCCUCUCUGUUUUGUCUGUGUGCACAGAGGAAUCAUCACCUCCAAAUACUGGUCCCACGGUCACCCCPCCUAAUUUCUCAGUGUCACAAGUGCCCAACAUGCCCAGCUGUCCCCAGGCCUAUUCUGAACUGCAGAUGCUGUCCCCCAGCGAGCGGCAGUGUGUGGAGACGGUGGUCAACAUGGGCUACUCGUACGAGUGUGUCCUCAGAGCCAUGAAGAAGAAAGGAGAGAAUAUUGAGCAGAUUCUCGACUAUCUCUUUGCACAUGGACAGCUUUGUGAGAAGGGCUUCGACCCUCUUUUAGUGGAAGAGGCUCUGGAAAUGCACCAGUGUUCAGAAGAAAAGAUGAUGGAGUUUCUUCAGUUAAUGAGCAAAUUUAAGGAGAUGGGCUUUGAGCUGAAAGACAUUAAGGAAGUUUUGCUAUUACACAACAAUGACCAGGACAAUGCUUUGGAAGACCUCAUGGCUCGGGCAGGAGCCAGCUGAGACCAGGCCCUGCCUAGGCCCUGCCGCAGAЖCCACCAUCCCUGGGAGGCCCUGCAGAGCCCACCUGUGGGGAAAGAGAAGGGGCAGCUUCCGGAUUUUCUUUUGGGGGUUAGAAGGUCAGGUGUGGAGACUGCUCGCCAGUCUCUGUGAGCCUAGGCCCUGAGCUGGGGAGGUGGGGAAGAUUCGGGCAUGUGAGUGCCCCCAGAACUGUCCUGGCUCCUUCCGUAUUAAACGCAUUUGCAUUUUGAGAAGUGUCCUUCCCACUUCAGCCCUCCGGAGAGACUACCCUAGUCUUUCUGGGGUGUUUAUGUCCUCAGCU
Sequence (SHORT NAMES ENCODING)	AGACGCCCAAAUGAGUGGGGCGGUGAGGGGAAGGAGGAGGGAAGUAGGACUUCAACAUGGCGGCUGCGGCACUGGCGGUGGCUACGGUGACGGCCUGGCCCGGAGCGGGCAGAGUUGGAGGUGGUGGCGUUCGCUCUCCCUAGGGGCUGUCGGGAGCUCAGCGGGGACCGAGCCUGGGAGGCCGGCCGGUGCCAGCACCUUUCGGCUUCUGAGACGGCGGCAGCAGCGGCAUUCAGGGACUUUCAGUUACCUUGAUGAUGUCCCAUUUAAGACAGGAGACAAAUUCAAAACACCAGCUAAAGUUGGUCUACCUAUUGGCUUCUCCUUGCCUGAUUGUUUGCAGGUUGUCAGAGAAGUACAGUAUGACUUCUCUUUGGAAAAGAAAACCAUUGAGUGGGCUGAAGAGAUUAAGAAAAUCGAAGAAGCCGAGCGGGAAGCAGAGUGCAAAAUUGCGGAAGCAGAAGCUAAAGUGAAUUCUAAGAGUGGCCCAGAGGGCGAUAGCAAAAUGAGCUUCUCCAAGACUCACAGUACAGCCACAAUGCCACCUCCUAUUAACCCCAYCCUCGCCAGCUUGCAGCACAACAGCAUCCUCACACCAACUCGGGUCAGCAGUAGUGCCACGAAACAGAAAGUUCUCAGCCCACCUCACAUAAAGGCGGAUUUCAAUCUUGCUGm6ACUUUGAGUGUGAAGAAGACCCAUUUGAUAAUCUGGAGUUAAAAm6ACUAUUGAUGAGAAGGAAGAGCUGAGAAAUAUUCUGGUAGGAACCACUGGm6ACCCAUUAUGGCUCAGUUAUUGGm6ACAAUAm6ACUUGCCCAGGGGAGGCUCUGGGUCUGUGUUACAGGAUGAGGAGGUCCUGGCAYCCUUGGAACGGGCAACCCUAGAUUUCAAGCCUCUUCAUAAACCCAAUGGCUYUAUAACCUUACCACAGUUGGGCAACUGUGAAAAGAUGUCACUGUCUUCCAAAGUGUCCCUCCCCCCUAUACCUGCAGUAAGCAAUAUCAAAUCCCUGUCUUUCCCCAAm6ACUUGm6ACUCUGAUGACAGCAAUCAGAAGACAGCCAAGCUGGCGAGCACUUUCCAUAGCACAYCCUGCCUCCGCAAUGGCACGUUCCAGAAUUCCCUAAAGCCUUCCACCCAAAGCAGUGCCAGUGAGCUCAAUGGGCAUCACACUCUUGGGCUUUCAGCUUUGAm6ACUUGGm6ACAGUGGCACAGAGAUGCCAGCCCUGACAYCCUCCCAGAUGCCUUCCCUCUCUGUUUUGUCUGUGUGCACAGAGGAAUCAUCACCUCCAAAUACUGGUCCCACGGUCACCCCYCCUAAUUUCUCAGUGUCACAAGUGCCCAACAUGCCCAGCUGUCCCCAGGCCUAUUCUGAACUGCAGAUGCUGUCCCCCAGCGAGCGGCAGUGUGUGGAGACGGUGGUCAACAUGGGCUACUCGUACGAGUGUGUCCUCAGAGCCAUGAAGAAGAAAGGAGAGAAUAUUGAGCAGAUUCUCGACUAUCUCUUUGCACAUGGACAGCUUUGUGAGAAGGGCUUCGACCCUCUUUUAGUGGAAGAGGCUCUGGAAAUGCACCAGUGUUCAGAAGAAAAGAUGAUGGAGUUUCUUCAGUUAAUGAGCAAAUUUAAGGAGAUGGGCUUUGAGCUGAAAGACAUUAAGGAAGUUUUGCUAUUACACAACAAUGACCAGGACAAUGCUUUGGAAGACCUCAUGGCUCGGGCAGGAGCCAGCUGAGACCAGGCCCUGCCUAGGCCCUGCCGCAGAm6ACCACCAUCCCUGGGAGGCCCUGCAGAGCCCACCUGUGGGGAAAGAGAAGGGGCAGCUUCCGGAUUUUCUUUUGGGGGUUAGAAGGUCAGGUGUGGAGACUGCUCGCCAGUCUCUGUGAGCCUAGGCCCUGAGCUGGGGAGGUGGGGAAGAUUCGGGCAUGUGAGUGCCCCCAGAACUGUCCUGGCUCCUUCCGUAUUAAACGCAUUUGCAUUUUGAGAAGUGUCCUUCCCACUUCAGCCCUCCGGAGAGACUACCCUAGUCUUUCUGGGGUGUUUAUGUCCUCAGCU
Sequence (MODOMICS CODE ENCODING)	AGACGCCCAAAUGAGUGGGGCGGUGAGGGGAAGGAGGAGGGAAGUAGGACUUCAACAUGGCGGCUGCGGCACUGGCGGUGGCUACGGUGACGGCCUGGCCCGGAGCGGGCAGAGUUGGAGGUGGUGGCGUUCGCUCUCCCUAGGGGCUGUCGGGAGCUCAGCGGGGACCGAGCCUGGGAGGCCGGCCGGUGCCAGCACCUUUCGGCUUCUGAGACGGCGGCAGCAGCGGCAUUCAGGGACUUUCAGUUACCUUGAUGAUGUCCCAUUUAAGACAGGAGACAAAUUCAAAACACCAGCUAAAGUUGGUCUACCUAUUGGCUUCUCCUUGCCUGAUUGUUUGCAGGUUGUCAGAGAAGUACAGUAUGACUUCUCUUUGGAAAAGAAAACCAUUGAGUGGGCUGAAGAGAUUAAGAAAAUCGAAGAAGCCGAGCGGGAAGCAGAGUGCAAAAUUGCGGAAGCAGAAGCUAAAGUGAAUUCUAAGAGUGGCCCAGAGGGCGAUAGCAAAAUGAGCUUCUCCAAGACUCACAGUACAGCCACAAUGCCACCUCCUAUUAACCCCA2000000009UCCUCGCCAGCUUGCAGCACAACAGCAUCCUCACACCAACUCGGGUCAGCAGUAGUGCCACGAAACAGAAAGUUCUCAGCCCACCUCACAUAAAGGCGGAUUUCAAUCUUGCUG2000000006ACUUUGAGUGUGAAGAAGACCCAUUUGAUAAUCUGGAGUUAAAA2000000006ACUAUUGAUGAGAAGGAAGAGCUGAGAAAUAUUCUGGUAGGAACCACUGG2000000006ACCCAUUAUGGCUCAGUUAUUGG2000000006ACAAUA2000000006ACUUGCCCAGGGGAGGCUCUGGGUCUGUGUUACAGGAUGAGGAGGUCCUGGCA2000000009UCCUUGGAACGGGCAACCCUAGAUUUCAAGCCUCUUCAUAAACCCAAUGGCU2000000009UUAUAACCUUACCACAGUUGGGCAACUGUGAAAAGAUGUCACUGUCUUCCAAAGUGUCCCUCCCCCCUAUACCUGCAGUAAGCAAUAUCAAAUCCCUGUCUUUCCCCAA2000000006ACUUG2000000006ACUCUGAUGACAGCAAUCAGAAGACAGCCAAGCUGGCGAGCACUUUCCAUAGCACA2000000009UCCUGCCUCCGCAAUGGCACGUUCCAGAAUUCCCUAAAGCCUUCCACCCAAAGCAGUGCCAGUGAGCUCAAUGGGCAUCACACUCUUGGGCUUUCAGCUUUGA2000000006ACUUGG2000000006ACAGUGGCACAGAGAUGCCAGCCCUGACA2000000009UCCUCCCAGAUGCCUUCCCUCUCUGUUUUGUCUGUGUGCACAGAGGAAUCAUCACCUCCAAAUACUGGUCCCACGGUCACCCC2000000009UCCUAAUUUCUCAGUGUCACAAGUGCCCAACAUGCCCAGCUGUCCCCAGGCCUAUUCUGAACUGCAGAUGCUGUCCCCCAGCGAGCGGCAGUGUGUGGAGACGGUGGUCAACAUGGGCUACUCGUACGAGUGUGUCCUCAGAGCCAUGAAGAAGAAAGGAGAGAAUAUUGAGCAGAUUCUCGACUAUCUCUUUGCACAUGGACAGCUUUGUGAGAAGGGCUUCGACCCUCUUUUAGUGGAAGAGGCUCUGGAAAUGCACCAGUGUUCAGAAGAAAAGAUGAUGGAGUUUCUUCAGUUAAUGAGCAAAUUUAAGGAGAUGGGCUUUGAGCUGAAAGACAUUAAGGAAGUUUUGCUAUUACACAACAAUGACCAGGACAAUGCUUUGGAAGACCUCAUGGCUCGGGCAGGAGCCAGCUGAGACCAGGCCCUGCCUAGGCCCUGCCGCAGA2000000006ACCACCAUCCCUGGGAGGCCCUGCAGAGCCCACCUGUGGGGAAAGAGAAGGGGCAGCUUCCGGAUUUUCUUUUGGGGGUUAGAAGGUCAGGUGUGGAGACUGCUCGCCAGUCUCUGUGAGCCUAGGCCCUGAGCUGGGGAGGUGGGGAAGAUUCGGGCAUGUGAGUGCCCCCAGAACUGUCCUGGCUCCUUCCGUAUUAAACGCAUUUGCAUUUUGAGAAGUGUCCUUCCCACUUCAGCCCUCCGGAGAGACUACCCUAGUCUUUCUGGGGUGUUUAUGUCCUCAGCU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	561	675	719	769	792	798	851	903	1012	1017	1073	1176	1182	1211	1294	1742
Modification Positions	Y	m6A	m6A	m6A	m6A	m6A	Y	Y	m6A	m6A	Y	m6A	m6A	Y	Y	m6A
Genomic Coordinates	9:34241384:+	9:34241498:+	9:34241542:+	9:34241592:+	9:34241615:+	9:34241621:+	9:34241674:+	9:34241726:+	9:34241835:+	9:34241840:+	9:34241896:+	9:34241999:+	9:34242005:+	9:34242034:+	9:34249787:+	9:34251563:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H KENzb7mwdBd9 Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 93arJtwJmuS9 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML 834aFpha8RvT ksEP666umrV9 BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 93arJtwJmuS9 nfCHyrYzE6fB BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se 93arJtwJmuS9 KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se 93arJtwJmuS9 BkoLW2CBToyL KTLz8piFYdwC nfCHyrYzE6fB KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8