Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000257497
Gene ID: ENSG00000135046
Gene Name: ANXA1
Sequence (UNICHARACTER ENCODING) ЖGUGUGAAAUCUUCAGAGAAGAAUUUCUCUPUAGUUCUUUGCAAGAAGGUAGAGAUAAAGACACUUUUUCAAAAAUGGCAAUGGUAUCAGAAUUCCUCAAGCAGGCCUGGUUUAUUGAAAAUGAAGAGCAGGAAUAUGUUCAAACUGUGAAGUCAPCCAAAGGUGGUCCCGGAUCAGCGGUGAGCCCCUAUCCUACCUUCAAUCCAPCCUCGGAUGUCGCUGCCUUGCAUAAGGCCAUAAUGGUUAAAGGUGUGGAUGAAGCAACCAUCAUUGACAUUCUAACUAAGCGAAACAAUGCACAGCGUCAACAGAUCAAAGCAGCAUAUCUCCAGGAAACAGGAAAGCCCCUGGAUGAAACACUGAAGAAAGCCCUUACЖGGUCACCUUGAGGAGGUUGUUUUAGCUCUGCUAAAAACUCCAGCGCAAUUUGAUGCUGAUGAACUUCGUGCUGCCAUGAAGGGCCUUGGAACUGAUGAAGAUACUCUAAUUGAGAUUUUGGCAUCAAGAACUAACAAAGAAAUCAGAGACAUUAЖCAGGGUCUACAGAGAGGAACUGAAGAGAGAUCUGGCCAAAGACAUAACCUCAGACACAUCUGGAGAUUUUCGGAACGCUUUGCUUUCUCUUGCUAAGGGUGACCGAUCUGAGGACUUUGGUGUGAAUGAAGACUUGGCUGAUUCAGAUGCCAGGGCCUUGUAUGAAGCAGGAGAAAGGAGAAAGGGGACAGACGUAAACGUGUUCAAUACCAPCCUUACCACCAGAAGCUAUCCACAACUUCGCAGAGUGUUUCAGAAAUACACCAAGUACAGUAAGCAUGACAUGAACAAAGUUCUGGACCUGGAGUUGAAAGGUGACAUUGAGAAAUGCCUCACAGCUAUCGUGAAGUGCGCCACAAGCAAACCAGCUUUCUUUGCAGAGAAGCUUCAUCAAGCCAUGAAAGGUGUUGGAACUCGCCAUAAGGCAUUGAUCAGGAUUAUGGUUUCCCGUUCUGAAAUUGACAUGAAUGAUAUCAAAGCAUUCUAUCAGAAGAUGUAUGGUAUCUCCCUUUGCCAAGCCAPCCUGGAUGAAACCAAAGGAGAUUAUGAGAAAAUCCUGGUGGCUCUUUGUGGAGGAAACUAAACAUUCCCUUGAUGGUCUCAAGCUAUGAUCAGAAGACUPUAAUUAUAUAUUUUCAPCCUAUAAGCUUAAAUAGGAAAGUUUCUUCAACAGGAUUACЖGUGUAGCUACCUACAUGCUGAAAAAUAUAGCCUPUAAAUCAUUUUUAUAUUAUAЖCUCUGUAUAAUAGAGAUAAGUCCAUUUUUUAAAAAUGUUUUCCCCAAACCAUAAAACCCUAUACAAGUUGUUCUAGUAACAAUACAUGAGAAAGAUGUCUAUGUAGCUGAAAAUAAAAUGACGUCACAAGACAA
Sequence (SHORT NAMES ENCODING) m6AGUGUGAAAUCUUCAGAGAAGAAUUUCUCUYUAGUUCUUUGCAAGAAGGUAGAGAUAAAGACACUUUUUCAAAAAUGGCAAUGGUAUCAGAAUUCCUCAAGCAGGCCUGGUUUAUUGAAAAUGAAGAGCAGGAAUAUGUUCAAACUGUGAAGUCAYCCAAAGGUGGUCCCGGAUCAGCGGUGAGCCCCUAUCCUACCUUCAAUCCAYCCUCGGAUGUCGCUGCCUUGCAUAAGGCCAUAAUGGUUAAAGGUGUGGAUGAAGCAACCAUCAUUGACAUUCUAACUAAGCGAAACAAUGCACAGCGUCAACAGAUCAAAGCAGCAUAUCUCCAGGAAACAGGAAAGCCCCUGGAUGAAACACUGAAGAAAGCCCUUACm6AGGUCACCUUGAGGAGGUUGUUUUAGCUCUGCUAAAAACUCCAGCGCAAUUUGAUGCUGAUGAACUUCGUGCUGCCAUGAAGGGCCUUGGAACUGAUGAAGAUACUCUAAUUGAGAUUUUGGCAUCAAGAACUAACAAAGAAAUCAGAGACAUUAm6ACAGGGUCUACAGAGAGGAACUGAAGAGAGAUCUGGCCAAAGACAUAACCUCAGACACAUCUGGAGAUUUUCGGAACGCUUUGCUUUCUCUUGCUAAGGGUGACCGAUCUGAGGACUUUGGUGUGAAUGAAGACUUGGCUGAUUCAGAUGCCAGGGCCUUGUAUGAAGCAGGAGAAAGGAGAAAGGGGACAGACGUAAACGUGUUCAAUACCAYCCUUACCACCAGAAGCUAUCCACAACUUCGCAGAGUGUUUCAGAAAUACACCAAGUACAGUAAGCAUGACAUGAACAAAGUUCUGGACCUGGAGUUGAAAGGUGACAUUGAGAAAUGCCUCACAGCUAUCGUGAAGUGCGCCACAAGCAAACCAGCUUUCUUUGCAGAGAAGCUUCAUCAAGCCAUGAAAGGUGUUGGAACUCGCCAUAAGGCAUUGAUCAGGAUUAUGGUUUCCCGUUCUGAAAUUGACAUGAAUGAUAUCAAAGCAUUCUAUCAGAAGAUGUAUGGUAUCUCCCUUUGCCAAGCCAYCCUGGAUGAAACCAAAGGAGAUUAUGAGAAAAUCCUGGUGGCUCUUUGUGGAGGAAACUAAACAUUCCCUUGAUGGUCUCAAGCUAUGAUCAGAAGACUYUAAUUAUAUAUUUUCAYCCUAUAAGCUUAAAUAGGAAAGUUUCUUCAACAGGAUUACm6AGUGUAGCUACCUACAUGCUGAAAAAUAUAGCCUYUAAAUCAUUUUUAUAUUAUAm6ACUCUGUAUAAUAGAGAUAAGUCCAUUUUUUAAAAAUGUUUUCCCCAAACCAUAAAACCCUAUACAAGUUGUUCUAGUAACAAUACAUGAGAAAGAUGUCUAUGUAGCUGAAAAUAAAAUGACGUCACAAGACAA
Sequence (MODOMICS CODE ENCODING) 2000000006AGUGUGAAAUCUUCAGAGAAGAAUUUCUCU2000000009UUAGUUCUUUGCAAGAAGGUAGAGAUAAAGACACUUUUUCAAAAAUGGCAAUGGUAUCAGAAUUCCUCAAGCAGGCCUGGUUUAUUGAAAAUGAAGAGCAGGAAUAUGUUCAAACUGUGAAGUCA2000000009UCCAAAGGUGGUCCCGGAUCAGCGGUGAGCCCCUAUCCUACCUUCAAUCCA2000000009UCCUCGGAUGUCGCUGCCUUGCAUAAGGCCAUAAUGGUUAAAGGUGUGGAUGAAGCAACCAUCAUUGACAUUCUAACUAAGCGAAACAAUGCACAGCGUCAACAGAUCAAAGCAGCAUAUCUCCAGGAAACAGGAAAGCCCCUGGAUGAAACACUGAAGAAAGCCCUUAC2000000006AGGUCACCUUGAGGAGGUUGUUUUAGCUCUGCUAAAAACUCCAGCGCAAUUUGAUGCUGAUGAACUUCGUGCUGCCAUGAAGGGCCUUGGAACUGAUGAAGAUACUCUAAUUGAGAUUUUGGCAUCAAGAACUAACAAAGAAAUCAGAGACAUUA2000000006ACAGGGUCUACAGAGAGGAACUGAAGAGAGAUCUGGCCAAAGACAUAACCUCAGACACAUCUGGAGAUUUUCGGAACGCUUUGCUUUCUCUUGCUAAGGGUGACCGAUCUGAGGACUUUGGUGUGAAUGAAGACUUGGCUGAUUCAGAUGCCAGGGCCUUGUAUGAAGCAGGAGAAAGGAGAAAGGGGACAGACGUAAACGUGUUCAAUACCA2000000009UCCUUACCACCAGAAGCUAUCCACAACUUCGCAGAGUGUUUCAGAAAUACACCAAGUACAGUAAGCAUGACAUGAACAAAGUUCUGGACCUGGAGUUGAAAGGUGACAUUGAGAAAUGCCUCACAGCUAUCGUGAAGUGCGCCACAAGCAAACCAGCUUUCUUUGCAGAGAAGCUUCAUCAAGCCAUGAAAGGUGUUGGAACUCGCCAUAAGGCAUUGAUCAGGAUUAUGGUUUCCCGUUCUGAAAUUGACAUGAAUGAUAUCAAAGCAUUCUAUCAGAAGAUGUAUGGUAUCUCCCUUUGCCAAGCCA2000000009UCCUGGAUGAAACCAAAGGAGAUUAUGAGAAAAUCCUGGUGGCUCUUUGUGGAGGAAACUAAACAUUCCCUUGAUGGUCUCAAGCUAUGAUCAGAAGACU2000000009UUAAUUAUAUAUUUUCA2000000009UCCUAUAAGCUUAAAUAGGAAAGUUUCUUCAACAGGAUUAC2000000006AGUGUAGCUACCUACAUGCUGAAAAAUAUAGCCU2000000009UUAAAUCAUUUUUAUAUUAUA2000000006ACUCUGUAUAAUAGAGAUAAGUCCAUUUUUUAAAAAUGUUUUCCCCAAACCAUAAAACCCUAUACAAGUUGUUCUAGUAACAAUACAUGAGAAAGAUGUCUAUGUAGCUGAAAAUAAAAUGACGUCACAAGACAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1 31 156 207 377 532 745 1054 1154 1171 1212 1246 1267
Modification Positions m6A Y Y Y m6A m6A Y Y Y Y m6A Y m6A
Genomic Coordinates 9:73151865:+ 9:73151895:+ 9:73158710:+ 9:73158761:+ 9:73160295:+ 9:73160876:+ 9:73165174:+ 9:73169150:+ 9:73170146:+ 9:73170163:+ 9:73170204:+ 9:73170238:+ 9:73170259:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BsCW7emuRX7M
KENzb7mwdBd9
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
XWZVGdLC6gGJ
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
3kRDPWwiRCgi
L6w2k2VEv4EY
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
BtsJQJ3DteUq
bXBqJigD9oV3
CxQaH6qDB9bC
dknfVe6BK8aP
eGNFqdoGxzRm
f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac