General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000610832
Gene ID:	ENSG00000136826
Gene Name:	KLF4
Sequence (UNICHARACTER ENCODING)	AGUUUCCCGACCAGAGAGAACGAACGUGUCUGCGGGCGCGCGGGGAGCAGAGGCGGUGGCGGGCGGCGGCGGCACCGGGAGCCGCCGAGUGACCCUCCCCCGCCCCUCUGGCCCCCCACCCUCCCACCCGCCCGUGGCCCGCGCCCAUGGCCGCGCGCGCUCCACACAACUCACCGGAGUCCGCGCCUUGCGCCGCCGACCAGUUCGCAGCUCCGCGCCACGGCAGCCAGUCUCACCUGGCGGCACCGCCCGCCCACCGCCCCGGCCACAGCCCCUGCGCCCACGGCAGCACUCGAGGCGACCGCGACAGUGGUGGGGGACGCUGCUGAGUGGAAGAGAGCGCAGCCCGGCCACCGGACCUACUUACUCGCCUUGCUGAUUGUCUAUUUUUGCGUUUACAACUUUUCUAAGAЖCUUUUGUAUACAAAGGAACUUUUUAAAAAAGACGCUUCCAAGUUAUAUUUAAUCCAAAGAAGAAGGAUCUCGGCCAAUUUGGGGUUUUGGGUUUUGGCUUCGUUUCUUCUCUUCGUUGACUUUGGGGUUCAGGUGCCCCAGCUGCUUCGGGCUGCCGAGGACCUUCUGGGCCCCCACAUUAAUGAGGCAGCCACCUGGCGAGUCUGACAUGGCUGUCAGCGACGCGCUGCUCCCAUCUUUCUCCACGUUCGCGUCUGGCCCGGCGGGAAGGGAGAAGACACUGCGUCAAGCAGGUGCCCCGAAUAACCUCAUGCCACCCGGUUCCUGCAUGCCAGAGGAGCCCAAGCCAAAGAGGGGAAGACGAUCGUGGCCCCGGAAAAGGACCGCCACCCACACUUGUGAUUACGCGGGCUGCGGCAAAACCUACACAAAGAGUUCCCAUCUCAAGGCACACCUGCGAACCCACACAGGUGAGAAACCUUACCACUGUGACUGGGACGGCUGUGGAUGGAAAUUCGCCCGCUCAGAUGAЖCUGACCAGGCACUACCGUAAACACACGGGGCACCGCCCGUUCCAGUGCCAAAAAUGCGACCGAGCAUUUUCCAGGUCGGACCACCUCGCCUUACACAUGAAGAGGCAUUUUUAAAUCCCAGACAGUGGAUAUGACCCACACUGCCAGAAGAGAAUUCAGUAUUUUUUACUUUUCACACUGUCUUCCCGAUGAGGGAAGGAGCCCAGCCAGAAAGCACUACAAUCAUGGUCAAGUUCCCAACUGAGUCAUCUUGUGAGUGGAUAAUCAGGAAAAAUGAGGAAUCCAAAAGЖCAAAAAUCAAAGAЖCAGAUGGGGUCUGUGACUGGAUCUUCUAUCAUUCCAAUUCUAAAUCCGACUUGAAUAUUCCUGGЖCUUACЖAAAUGCCAAGGGGGUGACUGGAAGUUGUGGAUAUCAGGGUAUAAAUUAUAUCCGUGAGUUGGGGGAGGGAAGACCAGAAUUCCCUUGAAUUGUGUAUUGAUGCAAUAUAAGCAUAAAAGAUCACCUUGUAUUCUCUPUACCUUCUAAAAGCCAUUAUUAUGAUGUUAGAAGAAGAGGAAGAAAUUCAGGUACAGAAAACAUGUUUAAAUAGCCUAAAUGAUGGUGCUUGGUGAGUCUUGGUUCUAAAGGUACCAAACAAGGAAGCCAAAGUUUUCAAACUGCUGCAUACUUUGACAAGGAAAAUCUAUAUUUGUCUUCCGAUCAACAUUUAUGACCUAAGUCAGGUAAUAUACCUGGUUUACUUCUPUAGCAUUUUUAUGCAGACAGUCUGUUAUGCACUGUGGUUUCAGAUGUGCAAUAAUUUGUACAAUGGUUUAUUCCCAAGUAUGCCUUAAGCAGAACAAAUGUGUUUUUCUAUAUAGUUCCUUGCCUUAAUAAAUAUGUAAUAUAAAUUUAAGCAAACGUCUAUUUUGUAUAUUUGUAAACUACAAAGUAAAAUGAACAUUUUGUGGAGUUUGUAUUUUGCAUACUCAAGGUGAGAAUUAAGUUUUAAAUAAACCUAUAAUAUUUUAUCUG
Sequence (SHORT NAMES ENCODING)	AGUUUCCCGACCAGAGAGAACGAACGUGUCUGCGGGCGCGCGGGGAGCAGAGGCGGUGGCGGGCGGCGGCGGCACCGGGAGCCGCCGAGUGACCCUCCCCCGCCCCUCUGGCCCCCCACCCUCCCACCCGCCCGUGGCCCGCGCCCAUGGCCGCGCGCGCUCCACACAACUCACCGGAGUCCGCGCCUUGCGCCGCCGACCAGUUCGCAGCUCCGCGCCACGGCAGCCAGUCUCACCUGGCGGCACCGCCCGCCCACCGCCCCGGCCACAGCCCCUGCGCCCACGGCAGCACUCGAGGCGACCGCGACAGUGGUGGGGGACGCUGCUGAGUGGAAGAGAGCGCAGCCCGGCCACCGGACCUACUUACUCGCCUUGCUGAUUGUCUAUUUUUGCGUUUACAACUUUUCUAAGAm6ACUUUUGUAUACAAAGGAACUUUUUAAAAAAGACGCUUCCAAGUUAUAUUUAAUCCAAAGAAGAAGGAUCUCGGCCAAUUUGGGGUUUUGGGUUUUGGCUUCGUUUCUUCUCUUCGUUGACUUUGGGGUUCAGGUGCCCCAGCUGCUUCGGGCUGCCGAGGACCUUCUGGGCCCCCACAUUAAUGAGGCAGCCACCUGGCGAGUCUGACAUGGCUGUCAGCGACGCGCUGCUCCCAUCUUUCUCCACGUUCGCGUCUGGCCCGGCGGGAAGGGAGAAGACACUGCGUCAAGCAGGUGCCCCGAAUAACCUCAUGCCACCCGGUUCCUGCAUGCCAGAGGAGCCCAAGCCAAAGAGGGGAAGACGAUCGUGGCCCCGGAAAAGGACCGCCACCCACACUUGUGAUUACGCGGGCUGCGGCAAAACCUACACAAAGAGUUCCCAUCUCAAGGCACACCUGCGAACCCACACAGGUGAGAAACCUUACCACUGUGACUGGGACGGCUGUGGAUGGAAAUUCGCCCGCUCAGAUGAm6ACUGACCAGGCACUACCGUAAACACACGGGGCACCGCCCGUUCCAGUGCCAAAAAUGCGACCGAGCAUUUUCCAGGUCGGACCACCUCGCCUUACACAUGAAGAGGCAUUUUUAAAUCCCAGACAGUGGAUAUGACCCACACUGCCAGAAGAGAAUUCAGUAUUUUUUACUUUUCACACUGUCUUCCCGAUGAGGGAAGGAGCCCAGCCAGAAAGCACUACAAUCAUGGUCAAGUUCCCAACUGAGUCAUCUUGUGAGUGGAUAAUCAGGAAAAAUGAGGAAUCCAAAAGm6ACAAAAAUCAAAGAm6ACAGAUGGGGUCUGUGACUGGAUCUUCUAUCAUUCCAAUUCUAAAUCCGACUUGAAUAUUCCUGGm6ACUUACm6AAAAUGCCAAGGGGGUGACUGGAAGUUGUGGAUAUCAGGGUAUAAAUUAUAUCCGUGAGUUGGGGGAGGGAAGACCAGAAUUCCCUUGAAUUGUGUAUUGAUGCAAUAUAAGCAUAAAAGAUCACCUUGUAUUCUCUYUACCUUCUAAAAGCCAUUAUUAUGAUGUUAGAAGAAGAGGAAGAAAUUCAGGUACAGAAAACAUGUUUAAAUAGCCUAAAUGAUGGUGCUUGGUGAGUCUUGGUUCUAAAGGUACCAAACAAGGAAGCCAAAGUUUUCAAACUGCUGCAUACUUUGACAAGGAAAAUCUAUAUUUGUCUUCCGAUCAACAUUUAUGACCUAAGUCAGGUAAUAUACCUGGUUUACUUCUYUAGCAUUUUUAUGCAGACAGUCUGUUAUGCACUGUGGUUUCAGAUGUGCAAUAAUUUGUACAAUGGUUUAUUCCCAAGUAUGCCUUAAGCAGAACAAAUGUGUUUUUCUAUAUAGUUCCUUGCCUUAAUAAAUAUGUAAUAUAAAUUUAAGCAAACGUCUAUUUUGUAUAUUUGUAAACUACAAAGUAAAAUGAACAUUUUGUGGAGUUUGUAUUUUGCAUACUCAAGGUGAGAAUUAAGUUUUAAAUAAACCUAUAAUAUUUUAUCUG
Sequence (MODOMICS CODE ENCODING)	AGUUUCCCGACCAGAGAGAACGAACGUGUCUGCGGGCGCGCGGGGAGCAGAGGCGGUGGCGGGCGGCGGCGGCACCGGGAGCCGCCGAGUGACCCUCCCCCGCCCCUCUGGCCCCCCACCCUCCCACCCGCCCGUGGCCCGCGCCCAUGGCCGCGCGCGCUCCACACAACUCACCGGAGUCCGCGCCUUGCGCCGCCGACCAGUUCGCAGCUCCGCGCCACGGCAGCCAGUCUCACCUGGCGGCACCGCCCGCCCACCGCCCCGGCCACAGCCCCUGCGCCCACGGCAGCACUCGAGGCGACCGCGACAGUGGUGGGGGACGCUGCUGAGUGGAAGAGAGCGCAGCCCGGCCACCGGACCUACUUACUCGCCUUGCUGAUUGUCUAUUUUUGCGUUUACAACUUUUCUAAGA2000000006ACUUUUGUAUACAAAGGAACUUUUUAAAAAAGACGCUUCCAAGUUAUAUUUAAUCCAAAGAAGAAGGAUCUCGGCCAAUUUGGGGUUUUGGGUUUUGGCUUCGUUUCUUCUCUUCGUUGACUUUGGGGUUCAGGUGCCCCAGCUGCUUCGGGCUGCCGAGGACCUUCUGGGCCCCCACAUUAAUGAGGCAGCCACCUGGCGAGUCUGACAUGGCUGUCAGCGACGCGCUGCUCCCAUCUUUCUCCACGUUCGCGUCUGGCCCGGCGGGAAGGGAGAAGACACUGCGUCAAGCAGGUGCCCCGAAUAACCUCAUGCCACCCGGUUCCUGCAUGCCAGAGGAGCCCAAGCCAAAGAGGGGAAGACGAUCGUGGCCCCGGAAAAGGACCGCCACCCACACUUGUGAUUACGCGGGCUGCGGCAAAACCUACACAAAGAGUUCCCAUCUCAAGGCACACCUGCGAACCCACACAGGUGAGAAACCUUACCACUGUGACUGGGACGGCUGUGGAUGGAAAUUCGCCCGCUCAGAUGA2000000006ACUGACCAGGCACUACCGUAAACACACGGGGCACCGCCCGUUCCAGUGCCAAAAAUGCGACCGAGCAUUUUCCAGGUCGGACCACCUCGCCUUACACAUGAAGAGGCAUUUUUAAAUCCCAGACAGUGGAUAUGACCCACACUGCCAGAAGAGAAUUCAGUAUUUUUUACUUUUCACACUGUCUUCCCGAUGAGGGAAGGAGCCCAGCCAGAAAGCACUACAAUCAUGGUCAAGUUCCCAACUGAGUCAUCUUGUGAGUGGAUAAUCAGGAAAAAUGAGGAAUCCAAAAG2000000006ACAAAAAUCAAAGA2000000006ACAGAUGGGGUCUGUGACUGGAUCUUCUAUCAUUCCAAUUCUAAAUCCGACUUGAAUAUUCCUGG2000000006ACUUAC2000000006AAAAUGCCAAGGGGGUGACUGGAAGUUGUGGAUAUCAGGGUAUAAAUUAUAUCCGUGAGUUGGGGGAGGGAAGACCAGAAUUCCCUUGAAUUGUGUAUUGAUGCAAUAUAAGCAUAAAAGAUCACCUUGUAUUCUCU2000000009UUACCUUCUAAAAGCCAUUAUUAUGAUGUUAGAAGAAGAGGAAGAAAUUCAGGUACAGAAAACAUGUUUAAAUAGCCUAAAUGAUGGUGCUUGGUGAGUCUUGGUUCUAAAGGUACCAAACAAGGAAGCCAAAGUUUUCAAACUGCUGCAUACUUUGACAAGGAAAAUCUAUAUUUGUCUUCCGAUCAACAUUUAUGACCUAAGUCAGGUAAUAUACCUGGUUUACUUCU2000000009UUAGCAUUUUUAUGCAGACAGUCUGUUAUGCACUGUGGUUUCAGAUGUGCAAUAAUUUGUACAAUGGUUUAUUCCCAAGUAUGCCUUAAGCAGAACAAAUGUGUUUUUCUAUAUAGUUCCUUGCCUUAAUAAAUAUGUAAUAUAAAUUUAAGCAAACGUCUAUUUUGUAUAUUUGUAAACUACAAAGUAAAAUGAACAUUUUGUGGAGUUUGUAUUUUGCAUACUCAAGGUGAGAAUUAAGUUUUAAAUAAACCUAUAAUAUUUUAUCUG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	413	945	1235	1249	1314	1320	1457	1687
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	Y	Y
Genomic Coordinates	9:107489354:-	9:107485865:-	9:107485575:-	9:107485561:-	9:107485496:-	9:107485490:-	9:107485353:-	9:107485123:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	WiQcrNTGZHPT UKen6WEino9G BtsJQJ3DteUq	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 WiQcrNTGZHPT BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac	aJksAshEgQ8U D6ncpa2PPWj3 KTLz8piFYdwC BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U BkoLW2CBToyL WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac	BtsJQJ3DteUq CxQaH6qDB9bC dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac