Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000371671
Gene ID: ENSG00000196642
Gene Name: RABL6
Sequence (UNICHARACTER ENCODING) CGCCAAGAUGGCGGCGCUGACUCCUGGAGAGCGGUCGCGCCGGAGGCCGCGGGGGCCGGAGCGGAGCAGCCGCGGCUGAGGUU?CCGAGUCGCCGCUCGGGGCUGCGCUCCGCCGCCGGGACCCCGGCCUCUGGCCGCGCCGGCUCCGGCCUCCGGGGGGGCCGGGGCCGCCGGGACAUGGUGCCAGUCGCACCCCUUCCCCGCCGCCGCUGAGCUCGCCGGCCGCGCCCGGGCUGGGACGUCCGAGCGGGAAGAUGUUUUCCGCCCUGAAGAAGCUGGUGGGGUCGGACCAGGCCCCGGGCCGGGACAAGAACAUCCCCGCCGGGCUGCAGUCCAUGAACCAGGCGUUGCAGAGGCGCUUCGCCAAGGGGGUGCAGUACAACAUGAAGAUAGUGAUCCGGGGAGACAGGAACACGGGCAAGACAGCGCUGUGGCACCGCCUGCAGGGCCGGCCGUUCGUGGAGGAGUACAPCCCCACACAGGAGAUCCAGGUCACCAGCAUCCACUGGAGCUACЖAGACCACGGAUGACAUCGUGAAGGUUGAAGUCUGGGAUGUAGUAGACAAAGGAAAAUGCAAAAAGCGAGGCGACGGCUUAAAGAUGGAGAACGACCCCCAGGAGGCGGAGUCUGAAAUGGCCCUGGAUGCUGAGUUCCUGGACGUGUACAAGAACUGCAACGGGGUGGUCAUGAUGUUCGACAUUACCAAGCAGUGGACCUUCAAUUACAUUCUCCGGGAGCUUCCAAAAGUGCCCACCCACGUGCCAGUGUGCGUGCUGGGAAЖCUACCGGGACAUGGGCGAGCЖCCGAGUCAPCCUGCCGGACGACGUGCGUGACUUCAUCGACAACCUGGACAGACCUCCAGGUUCCUCCUACUUCCGCUAUGCUGAGUCUUCCAUGAAGAACAGCUUCGGCCUAAAGUACCUUCAUAAGUUCUUCAAUAUCCCAUUUUUGCAGCUUCAGAAGGAUGUCAGGCUUGCCCAGGAAAGGGGCUGUGCUGUCGUCCUGGUGUCAGAAGAAGUGAGGAUGCCUGCAGGCUGGGЖCUGCUGCUGGGGЖCGUUUGGGUUGGAAGGAAGGCGGCAGUCAGЖCUUGUCCUGUGCCGGCACUGCUGGGGAGGCCCCPCCUUCCUGCAGAGCCGUCCCCUCAUCACUGGGUUGAUUACUCCUUAGAGAGCUCCCCACUGCUCAGCUGCUCCAUUCCCUAAUGGUUUGCCCUCCAAACCCUUCCAAAGCCUCCCЖGGGAGAGAACGGGACCCUGGЖCAGAGUCUUGAGCUGGAAGCGUAGGGCUGAGCUGUGUGUGACUAUCCUUUUGCUAUGGAUGUGUUCAAGCAGAUCUGAUGUCCUCGCCUGUCUCAGCAGCGGGACCCCUGUUUCCUCUUUGUCUUGCCCCUGGAUUGCCUGGAAGCAAAUUUCAGGCCUUCUPUAUGUCACCUAAAAAUAUUUCAAACACAUCUCUAAAAAAAUCAGUUGUUUUUUUAACCUGACCGUAGUACCUAAUGUAAUACCGCAUGUUAAЖCUCACAGAAGGUUUUUCUUGGAGAAAUAAGCCACAAUAACAAAUUGAAAAAAUAAAAUUCCCAAAGAGUU
Sequence (SHORT NAMES ENCODING) CGCCAAGAUGGCGGCGCUGACUCCUGGAGAGCGGUCGCGCCGGAGGCCGCGGGGGCCGGAGCGGAGCAGCCGCGGCUGAGGUUm5CCCGAGUCGCCGCUCGGGGCUGCGCUCCGCCGCCGGGACCCCGGCCUCUGGCCGCGCCGGCUCCGGCCUCCGGGGGGGCCGGGGCCGCCGGGACAUGGUGCCAGUCGCACCCCUUCCCCGCCGCCGCUGAGCUCGCCGGCCGCGCCCGGGCUGGGACGUCCGAGCGGGAAGAUGUUUUCCGCCCUGAAGAAGCUGGUGGGGUCGGACCAGGCCCCGGGCCGGGACAAGAACAUCCCCGCCGGGCUGCAGUCCAUGAACCAGGCGUUGCAGAGGCGCUUCGCCAAGGGGGUGCAGUACAACAUGAAGAUAGUGAUCCGGGGAGACAGGAACACGGGCAAGACAGCGCUGUGGCACCGCCUGCAGGGCCGGCCGUUCGUGGAGGAGUACAYCCCCACACAGGAGAUCCAGGUCACCAGCAUCCACUGGAGCUACm6AAGACCACGGAUGACAUCGUGAAGGUUGAAGUCUGGGAUGUAGUAGACAAAGGAAAAUGCAAAAAGCGAGGCGACGGCUUAAAGAUGGAGAACGACCCCCAGGAGGCGGAGUCUGAAAUGGCCCUGGAUGCUGAGUUCCUGGACGUGUACAAGAACUGCAACGGGGUGGUCAUGAUGUUCGACAUUACCAAGCAGUGGACCUUCAAUUACAUUCUCCGGGAGCUUCCAAAAGUGCCCACCCACGUGCCAGUGUGCGUGCUGGGAAm6ACUACCGGGACAUGGGCGAGCm6ACCGAGUCAYCCUGCCGGACGACGUGCGUGACUUCAUCGACAACCUGGACAGACCUCCAGGUUCCUCCUACUUCCGCUAUGCUGAGUCUUCCAUGAAGAACAGCUUCGGCCUAAAGUACCUUCAUAAGUUCUUCAAUAUCCCAUUUUUGCAGCUUCAGAAGGAUGUCAGGCUUGCCCAGGAAAGGGGCUGUGCUGUCGUCCUGGUGUCAGAAGAAGUGAGGAUGCCUGCAGGCUGGGm6ACUGCUGCUGGGGm6ACGUUUGGGUUGGAAGGAAGGCGGCAGUCAGm6ACUUGUCCUGUGCCGGCACUGCUGGGGAGGCCCCYCCUUCCUGCAGAGCCGUCCCCUCAUCACUGGGUUGAUUACUCCUUAGAGAGCUCCCCACUGCUCAGCUGCUCCAUUCCCUAAUGGUUUGCCCUCCAAACCCUUCCAAAGCCUCCCm6AGGGAGAGAACGGGACCCUGGm6ACAGAGUCUUGAGCUGGAAGCGUAGGGCUGAGCUGUGUGUGACUAUCCUUUUGCUAUGGAUGUGUUCAAGCAGAUCUGAUGUCCUCGCCUGUCUCAGCAGCGGGACCCCUGUUUCCUCUUUGUCUUGCCCCUGGAUUGCCUGGAAGCAAAUUUCAGGCCUUCUYUAUGUCACCUAAAAAUAUUUCAAACACAUCUCUAAAAAAAUCAGUUGUUUUUUUAACCUGACCGUAGUACCUAAUGUAAUACCGCAUGUUAAm6ACUCACAGAAGGUUUUUCUUGGAGAAAUAAGCCACAAUAACAAAUUGAAAAAAUAAAAUUCCCAAAGAGUU
Sequence (MODOMICS CODE ENCODING) CGCCAAGAUGGCGGCGCUGACUCCUGGAGAGCGGUCGCGCCGGAGGCCGCGGGGGCCGGAGCGGAGCAGCCGCGGCUGAGGUU2000000005CCCGAGUCGCCGCUCGGGGCUGCGCUCCGCCGCCGGGACCCCGGCCUCUGGCCGCGCCGGCUCCGGCCUCCGGGGGGGCCGGGGCCGCCGGGACAUGGUGCCAGUCGCACCCCUUCCCCGCCGCCGCUGAGCUCGCCGGCCGCGCCCGGGCUGGGACGUCCGAGCGGGAAGAUGUUUUCCGCCCUGAAGAAGCUGGUGGGGUCGGACCAGGCCCCGGGCCGGGACAAGAACAUCCCCGCCGGGCUGCAGUCCAUGAACCAGGCGUUGCAGAGGCGCUUCGCCAAGGGGGUGCAGUACAACAUGAAGAUAGUGAUCCGGGGAGACAGGAACACGGGCAAGACAGCGCUGUGGCACCGCCUGCAGGGCCGGCCGUUCGUGGAGGAGUACA2000000009UCCCCACACAGGAGAUCCAGGUCACCAGCAUCCACUGGAGCUAC2000000006AAGACCACGGAUGACAUCGUGAAGGUUGAAGUCUGGGAUGUAGUAGACAAAGGAAAAUGCAAAAAGCGAGGCGACGGCUUAAAGAUGGAGAACGACCCCCAGGAGGCGGAGUCUGAAAUGGCCCUGGAUGCUGAGUUCCUGGACGUGUACAAGAACUGCAACGGGGUGGUCAUGAUGUUCGACAUUACCAAGCAGUGGACCUUCAAUUACAUUCUCCGGGAGCUUCCAAAAGUGCCCACCCACGUGCCAGUGUGCGUGCUGGGAA2000000006ACUACCGGGACAUGGGCGAGC2000000006ACCGAGUCA2000000009UCCUGCCGGACGACGUGCGUGACUUCAUCGACAACCUGGACAGACCUCCAGGUUCCUCCUACUUCCGCUAUGCUGAGUCUUCCAUGAAGAACAGCUUCGGCCUAAAGUACCUUCAUAAGUUCUUCAAUAUCCCAUUUUUGCAGCUUCAGAAGGAUGUCAGGCUUGCCCAGGAAAGGGGCUGUGCUGUCGUCCUGGUGUCAGAAGAAGUGAGGAUGCCUGCAGGCUGGG2000000006ACUGCUGCUGGGG2000000006ACGUUUGGGUUGGAAGGAAGGCGGCAGUCAG2000000006ACUUGUCCUGUGCCGGCACUGCUGGGGAGGCCCC2000000009UCCUUCCUGCAGAGCCGUCCCCUCAUCACUGGGUUGAUUACUCCUUAGAGAGCUCCCCACUGCUCAGCUGCUCCAUUCCCUAAUGGUUUGCCCUCCAAACCCUUCCAAAGCCUCCC2000000006AGGGAGAGAACGGGACCCUGG2000000006ACAGAGUCUUGAGCUGGAAGCGUAGGGCUGAGCUGUGUGUGACUAUCCUUUUGCUAUGGAUGUGUUCAAGCAGAUCUGAUGUCCUCGCCUGUCUCAGCAGCGGGACCCCUGUUUCCUCUUUGUCUUGCCCCUGGAUUGCCUGGAAGCAAAUUUCAGGCCUUCU2000000009UUAUGUCACCUAAAAAUAUUUCAAACACAUCUCUAAAAAAAUCAGUUGUUUUUUUAACCUGACCGUAGUACCUAAUGUAAUACCGCAUGUUAA2000000006ACUCACAGAAGGUUUUUCUUGGAGAAAUAAGCCACAAUAACAAAUUGAAAAAAUAAAAUUCCCAAAGAGUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 84 472 516 781 802 811 1039 1052 1083 1117 1233 1254 1417 1510
Modification Positions m5C Y m6A m6A m6A Y m6A m6A m6A Y m6A m6A Y m6A
Genomic Coordinates 9:136808026:+ 9:136823612:+ 9:136823656:+ 9:136831789:+ 9:136831810:+ 9:136831819:+ 9:136833799:+ 9:136833812:+ 9:136833843:+ 9:136833877:+ 9:136833993:+ 9:136834014:+ 9:136834177:+ 9:136834270:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 4RW3xrzJ5VQa
JBTYPMm6qNsy
4Hod8ruppnD2
5tjPWDS39J3i
9De2LACts9mj
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