Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000476484
Gene ID: ENSG00000188938
Gene Name: FAM120AOS
Sequence (UNICHARACTER ENCODING) CGCGGCUCGGGGCUCCCGGAGGCGGCGGCGGAGGCGGAGGCCCGGAGUUGGGCCGGGACGGGAUCCGGGAGGCUUCUGAGCCGGAGCAGGCAGCGCCUGGAGGCCAGAGGCCGUUCGCCCGCCUCAGGCCGGUCGGCCGCCGCUCCCCUCCCCUGCGCCCUGUUCCCGGCAGGGCCAGAGAGGCCGCCGCCPCCGCCCGGUGGUUCUCGGGCGAAGGGAAGCCGCGAAGCAGGUCCUGGGGAAGAGCUCGCCUGCUCCUGAGGGAAGCAGCGAUAAGAUGGCGCUUUGAAGGGGAGCCGAGGCCGAGUCACUCUGUUCGUCGGGACGCCGCCUUUCUAACGCCGCCGUCGGCUCGCACCACUCUGGGCCUGCUGCCCACACUGЖCUGCGGGGUCCGGGAGAGCGGGAUGCUGGCCGGCCGCGCCUGGCUUCUUGGAAAGAGCAGGAAGGAGCGCGAGAAUGCAGUUCCGCGGCAGAAACCUCUGUAGAGGAGCAGGAUGCAACCGACAGGCUGUGGCCGGACAGCUGCUGCCCAGCACAUGGAGCCUGCACGCGCACGGUUUGGCCAAAGAAGCCCCCAUACUCCCGGUGAAAAAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGAGUACAAUGAUGUGUUCUCAGCUCACUGCAACCUCCCUCUCCCAGGUUCAAGUGAUCUCCUGCCUCAGCCUCUGGAGUAGCUGGGAUUACAGAUUUCCAGAAGCUGUUCUGUCAAUAACAAAGUCUCAAAGAAAACCACAAAACCACCAACACUAAGAUCAUUCUUGAGUCCAAUUUGAAAAACUAGGGUCAAGUUCUGCAGAGGCAUUGAAAGGЖCAAGAAACCACCCUGAUACCCAUCGUGUGAGGGAAAAUGCUCUAUUCACCAUUCCUCAGCUUCUGCUUCUGGUUUCAGAGUUCUCUCUAUAUUGGAGGGUGUUUUAAAGCUAGAGUGGUCUPUAUCCACUUUUAUUAЖCACAUCUGAAUGUGAAGGUCAAGAGAGGAAAGUGAUAUGUCCUAAGUCAGAGUAGAGUCAACAAGAAAAUAAGACAAACAGCGACUGAGCCCCUGGUGUAUACUGGGCAUUGGCCAGCUACUGGGGAUAUGGAGAUGAAGAAAACAUAACCCUUCUUCAAGGAGCCCAACCUACCAAGGUAGЖCAGACAUAUAGACAAAUAGAUACUUGCAUAGAAAAAAAGAGGAAAAGGGGAUCAGUGUGACCUGUGUAЖCUAAGUACCCUAUAAACCCPCCUGCAACAGAUCAUAUUGCCCUPUAUAGUGGGGAUGGUAAUCCCAUCUGAAUUCCACAGGUACUUUGCAGUCAUACCACACCCAUGUGUCUGUCGGUCCUGACUGUACCAUUUAUAAЖCAGCUUCACUUUCAGCAGUUCUCAGCCCUCUUAAGCUAGGGUCAUUGUCAGUAGGGAUACUGCUUCAPAAGCACCAGCAGAACACCAAAGGAGACCAUAUGGGUGAAAGCAACCAGCACUG
Sequence (SHORT NAMES ENCODING) CGCGGCUCGGGGCUCCCGGAGGCGGCGGCGGAGGCGGAGGCCCGGAGUUGGGCCGGGACGGGAUCCGGGAGGCUUCUGAGCCGGAGCAGGCAGCGCCUGGAGGCCAGAGGCCGUUCGCCCGCCUCAGGCCGGUCGGCCGCCGCUCCCCUCCCCUGCGCCCUGUUCCCGGCAGGGCCAGAGAGGCCGCCGCCYCCGCCCGGUGGUUCUCGGGCGAAGGGAAGCCGCGAAGCAGGUCCUGGGGAAGAGCUCGCCUGCUCCUGAGGGAAGCAGCGAUAAGAUGGCGCUUUGAAGGGGAGCCGAGGCCGAGUCACUCUGUUCGUCGGGACGCCGCCUUUCUAACGCCGCCGUCGGCUCGCACCACUCUGGGCCUGCUGCCCACACUGm6ACUGCGGGGUCCGGGAGAGCGGGAUGCUGGCCGGCCGCGCCUGGCUUCUUGGAAAGAGCAGGAAGGAGCGCGAGAAUGCAGUUCCGCGGCAGAAACCUCUGUAGAGGAGCAGGAUGCAACCGACAGGCUGUGGCCGGACAGCUGCUGCCCAGCACAUGGAGCCUGCACGCGCACGGUUUGGCCAAAGAAGCCCCCAUACUCCCGGUGAAAAAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGAGUACAAUGAUGUGUUCUCAGCUCACUGCAACCUCCCUCUCCCAGGUUCAAGUGAUCUCCUGCCUCAGCCUCUGGAGUAGCUGGGAUUACAGAUUUCCAGAAGCUGUUCUGUCAAUAACAAAGUCUCAAAGAAAACCACAAAACCACCAACACUAAGAUCAUUCUUGAGUCCAAUUUGAAAAACUAGGGUCAAGUUCUGCAGAGGCAUUGAAAGGm6ACAAGAAACCACCCUGAUACCCAUCGUGUGAGGGAAAAUGCUCUAUUCACCAUUCCUCAGCUUCUGCUUCUGGUUUCAGAGUUCUCUCUAUAUUGGAGGGUGUUUUAAAGCUAGAGUGGUCUYUAUCCACUUUUAUUAm6ACACAUCUGAAUGUGAAGGUCAAGAGAGGAAAGUGAUAUGUCCUAAGUCAGAGUAGAGUCAACAAGAAAAUAAGACAAACAGCGACUGAGCCCCUGGUGUAUACUGGGCAUUGGCCAGCUACUGGGGAUAUGGAGAUGAAGAAAACAUAACCCUUCUUCAAGGAGCCCAACCUACCAAGGUAGm6ACAGACAUAUAGACAAAUAGAUACUUGCAUAGAAAAAAAGAGGAAAAGGGGAUCAGUGUGACCUGUGUAm6ACUAAGUACCCUAUAAACCCYCCUGCAACAGAUCAUAUUGCCCUYUAUAGUGGGGAUGGUAAUCCCAUCUGAAUUCCACAGGUACUUUGCAGUCAUACCACACCCAUGUGUCUGUCGGUCCUGACUGUACCAUUUAUAAm6ACAGCUUCACUUUCAGCAGUUCUCAGCCCUCUUAAGCUAGGGUCAUUGUCAGUAGGGAUACUGCUUCAYAAGCACCAGCAGAACACCAAAGGAGACCAUAUGGGUGAAAGCAACCAGCACUG
Sequence (MODOMICS CODE ENCODING) CGCGGCUCGGGGCUCCCGGAGGCGGCGGCGGAGGCGGAGGCCCGGAGUUGGGCCGGGACGGGAUCCGGGAGGCUUCUGAGCCGGAGCAGGCAGCGCCUGGAGGCCAGAGGCCGUUCGCCCGCCUCAGGCCGGUCGGCCGCCGCUCCCCUCCCCUGCGCCCUGUUCCCGGCAGGGCCAGAGAGGCCGCCGCC2000000009UCCGCCCGGUGGUUCUCGGGCGAAGGGAAGCCGCGAAGCAGGUCCUGGGGAAGAGCUCGCCUGCUCCUGAGGGAAGCAGCGAUAAGAUGGCGCUUUGAAGGGGAGCCGAGGCCGAGUCACUCUGUUCGUCGGGACGCCGCCUUUCUAACGCCGCCGUCGGCUCGCACCACUCUGGGCCUGCUGCCCACACUG2000000006ACUGCGGGGUCCGGGAGAGCGGGAUGCUGGCCGGCCGCGCCUGGCUUCUUGGAAAGAGCAGGAAGGAGCGCGAGAAUGCAGUUCCGCGGCAGAAACCUCUGUAGAGGAGCAGGAUGCAACCGACAGGCUGUGGCCGGACAGCUGCUGCCCAGCACAUGGAGCCUGCACGCGCACGGUUUGGCCAAAGAAGCCCCCAUACUCCCGGUGAAAAAGAUGGAGUCUUGCUCUGUUGCCCAGGCUGGAGUACAAUGAUGUGUUCUCAGCUCACUGCAACCUCCCUCUCCCAGGUUCAAGUGAUCUCCUGCCUCAGCCUCUGGAGUAGCUGGGAUUACAGAUUUCCAGAAGCUGUUCUGUCAAUAACAAAGUCUCAAAGAAAACCACAAAACCACCAACACUAAGAUCAUUCUUGAGUCCAAUUUGAAAAACUAGGGUCAAGUUCUGCAGAGGCAUUGAAAGG2000000006ACAAGAAACCACCCUGAUACCCAUCGUGUGAGGGAAAAUGCUCUAUUCACCAUUCCUCAGCUUCUGCUUCUGGUUUCAGAGUUCUCUCUAUAUUGGAGGGUGUUUUAAAGCUAGAGUGGUCU2000000009UUAUCCACUUUUAUUA2000000006ACACAUCUGAAUGUGAAGGUCAAGAGAGGAAAGUGAUAUGUCCUAAGUCAGAGUAGAGUCAACAAGAAAAUAAGACAAACAGCGACUGAGCCCCUGGUGUAUACUGGGCAUUGGCCAGCUACUGGGGAUAUGGAGAUGAAGAAAACAUAACCCUUCUUCAAGGAGCCCAACCUACCAAGGUAG2000000006ACAGACAUAUAGACAAAUAGAUACUUGCAUAGAAAAAAAGAGGAAAAGGGGAUCAGUGUGACCUGUGUA2000000006ACUAAGUACCCUAUAAACCC2000000009UCCUGCAACAGAUCAUAUUGCCCU2000000009UUAUAGUGGGGAUGGUAAUCCCAUCUGAAUUCCACAGGUACUUUGCAGUCAUACCACACCCAUGUGUCUGUCGGUCCUGACUGUACCAUUUAUAA2000000006ACAGCUUCACUUUCAGCAGUUCUCAGCCCUCUUAAGCUAGGGUCAUUGUCAGUAGGGAUACUGCUUCA2000000009UAAGCACCAGCAGAACACCAAAGGAGACCAUAUGGGUGAAAGCAACCAGCACUG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 192 384 841 963 979 1162 1231 1251 1275 1370 1438
Modification Positions Y m6A m6A Y m6A m6A m6A Y Y m6A Y
Genomic Coordinates 9:93451371:- 9:93451179:- 9:93447574:- 9:93447452:- 9:93447436:- 9:93447253:- 9:93447184:- 9:93447164:- 9:93447140:- 9:93447045:- 9:93446977:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
S9vNeQQYrhac
Yfn77uLS5tv8
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
93arJtwJmuS9
ArijeGVTwYBw
BkoLW2CBToyL
KTLz8piFYdwC
Lny8GcCeVGc9
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
S9vNeQQYrhac
Yfn77uLS5tv8
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
93arJtwJmuS9
BkoLW2CBToyL
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
Mk6ShCGm6RBJ
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8