General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000353176
Gene ID:	ENSG00000175287
Gene Name:	PHYHD1
Sequence (UNICHARACTER ENCODING)	CGGCCUGCAGGUGUUGUUCUGACCCCAGCUCCACUGUGCCAGCCCGACUUGAGAUGCCAAGUAUCUUGGGCCUGAGGAUUGAGGCCUAGAGAGAGGCAGGCGUUCCUCAGAGUCA?AGGGAAUGGCGGCGCCUGGACUGGGACUCAGCCCAGCUGCUUGGCCUGACCCUCUCACAGCAUAAUUUCCCGGCACCUGGAGGCCGCGCUUAGAAGCCGCCCAGUGCCCUGAGCGUCUCCAUGGCCUGCCUGAGCCCCUCGCAGCUCCAGAAGUUCCAACAGGAUGGAUUCCUGGUGCUGGAAGGAUUCUUGUCUGCGGAAGAGUGUGUGGCCAUGCAACAAAGGAUUGGCGAGAUAGUGGCUGAAAUGGAUGUUCCUCUCCACUGCCGCACAGAAUUCUCCACCCAGGAAGAGGAGCAGCUUCGAGCCCAGGGCAGCACAGACUAUUUCUUGAGCAGUGGUGACAAGAUUCGAUUCUUCUUUGAGAAAGGCGUUUUUGAUGAGAAAGGAAAUUUCCUGGUCCCUCCGGAGAAAUCCAUCAACAAAAUUGGCCACGCUCUGCACGCCCACGACCCCGUCUUCAAGAGCAUCACACACUCCUUCAAGGUGCAGCAACCUCACUUUGGCGGUGAAGUCUCCCCUCAUCAGGACGCCUCCUUCCUGUACACGGAGCCCCUGGGCCGGGUGCUGGGCGUGUGGAUCGCAGUGGAGGAUGCCACGCUGGAGAACGGCUGUCUCUGGUUCAUCCCUGGCUCCCACACCAGUGGUGUGUCAAGAAGGAUGGUCCGGGCCCCUGUUGGCUCAGCGCCUGGUACCAGCUUCCUUGGGUCAGAGCCAGCCCGGGAUAЖCAGCCUCUUUGUGCCCACCCCAGUGCAGAGAGGGGCCCUGGUCCUCAPCCAUGGAGAAGUGGUACACAAGAGCAAGCAGAACCUCUCUGACCGCUCGCGCCAGGCCUACACUUUCCACCUCAUGGAGGCCUCUGGCACCACCUGGAGCCCGGAGAACUGGCUCCAGCCAACAGCUGAACUGCCCUUUCCCCAACUGUACACCUAAAGGCUCUCGCAGGGCAGGAGCCCUCGCCCCUCCCGGGUGAAGCUGUGGGCUGUAAЖCACCAGUGCCUUGCUCAGCCUCCUGGUUGCAACAGGGAGGUCUUGUCUCCCCUCCUGGGCUUUCCUCCUGCCCUGUGGGCAGCAGCCUAGGCUGGGUCAGGGGCUUCCCUAAGAUCUUCACCUCUCUGCCUCCCUACUGCCCCAACAUAGCCUUGAGGAGGCUUCUCAGCCACCAAAGGGUUCUGGCCCCUUCUCACUCUCCUCUCCUCUCAGAUGGAACUCUGGUUAUUAUGGUGUUAGUUAUCGAAUAAAAACGACUUCAGAAUGCA
Sequence (SHORT NAMES ENCODING)	CGGCCUGCAGGUGUUGUUCUGACCCCAGCUCCACUGUGCCAGCCCGACUUGAGAUGCCAAGUAUCUUGGGCCUGAGGAUUGAGGCCUAGAGAGAGGCAGGCGUUCCUCAGAGUCAm5CAGGGAAUGGCGGCGCCUGGACUGGGACUCAGCCCAGCUGCUUGGCCUGACCCUCUCACAGCAUAAUUUCCCGGCACCUGGAGGCCGCGCUUAGAAGCCGCCCAGUGCCCUGAGCGUCUCCAUGGCCUGCCUGAGCCCCUCGCAGCUCCAGAAGUUCCAACAGGAUGGAUUCCUGGUGCUGGAAGGAUUCUUGUCUGCGGAAGAGUGUGUGGCCAUGCAACAAAGGAUUGGCGAGAUAGUGGCUGAAAUGGAUGUUCCUCUCCACUGCCGCACAGAAUUCUCCACCCAGGAAGAGGAGCAGCUUCGAGCCCAGGGCAGCACAGACUAUUUCUUGAGCAGUGGUGACAAGAUUCGAUUCUUCUUUGAGAAAGGCGUUUUUGAUGAGAAAGGAAAUUUCCUGGUCCCUCCGGAGAAAUCCAUCAACAAAAUUGGCCACGCUCUGCACGCCCACGACCCCGUCUUCAAGAGCAUCACACACUCCUUCAAGGUGCAGCAACCUCACUUUGGCGGUGAAGUCUCCCCUCAUCAGGACGCCUCCUUCCUGUACACGGAGCCCCUGGGCCGGGUGCUGGGCGUGUGGAUCGCAGUGGAGGAUGCCACGCUGGAGAACGGCUGUCUCUGGUUCAUCCCUGGCUCCCACACCAGUGGUGUGUCAAGAAGGAUGGUCCGGGCCCCUGUUGGCUCAGCGCCUGGUACCAGCUUCCUUGGGUCAGAGCCAGCCCGGGAUAm6ACAGCCUCUUUGUGCCCACCCCAGUGCAGAGAGGGGCCCUGGUCCUCAYCCAUGGAGAAGUGGUACACAAGAGCAAGCAGAACCUCUCUGACCGCUCGCGCCAGGCCUACACUUUCCACCUCAUGGAGGCCUCUGGCACCACCUGGAGCCCGGAGAACUGGCUCCAGCCAACAGCUGAACUGCCCUUUCCCCAACUGUACACCUAAAGGCUCUCGCAGGGCAGGAGCCCUCGCCCCUCCCGGGUGAAGCUGUGGGCUGUAAm6ACACCAGUGCCUUGCUCAGCCUCCUGGUUGCAACAGGGAGGUCUUGUCUCCCCUCCUGGGCUUUCCUCCUGCCCUGUGGGCAGCAGCCUAGGCUGGGUCAGGGGCUUCCCUAAGAUCUUCACCUCUCUGCCUCCCUACUGCCCCAACAUAGCCUUGAGGAGGCUUCUCAGCCACCAAAGGGUUCUGGCCCCUUCUCACUCUCCUCUCCUCUCAGAUGGAACUCUGGUUAUUAUGGUGUUAGUUAUCGAAUAAAAACGACUUCAGAAUGCA
Sequence (MODOMICS CODE ENCODING)	CGGCCUGCAGGUGUUGUUCUGACCCCAGCUCCACUGUGCCAGCCCGACUUGAGAUGCCAAGUAUCUUGGGCCUGAGGAUUGAGGCCUAGAGAGAGGCAGGCGUUCCUCAGAGUCA2000000005CAGGGAAUGGCGGCGCCUGGACUGGGACUCAGCCCAGCUGCUUGGCCUGACCCUCUCACAGCAUAAUUUCCCGGCACCUGGAGGCCGCGCUUAGAAGCCGCCCAGUGCCCUGAGCGUCUCCAUGGCCUGCCUGAGCCCCUCGCAGCUCCAGAAGUUCCAACAGGAUGGAUUCCUGGUGCUGGAAGGAUUCUUGUCUGCGGAAGAGUGUGUGGCCAUGCAACAAAGGAUUGGCGAGAUAGUGGCUGAAAUGGAUGUUCCUCUCCACUGCCGCACAGAAUUCUCCACCCAGGAAGAGGAGCAGCUUCGAGCCCAGGGCAGCACAGACUAUUUCUUGAGCAGUGGUGACAAGAUUCGAUUCUUCUUUGAGAAAGGCGUUUUUGAUGAGAAAGGAAAUUUCCUGGUCCCUCCGGAGAAAUCCAUCAACAAAAUUGGCCACGCUCUGCACGCCCACGACCCCGUCUUCAAGAGCAUCACACACUCCUUCAAGGUGCAGCAACCUCACUUUGGCGGUGAAGUCUCCCCUCAUCAGGACGCCUCCUUCCUGUACACGGAGCCCCUGGGCCGGGUGCUGGGCGUGUGGAUCGCAGUGGAGGAUGCCACGCUGGAGAACGGCUGUCUCUGGUUCAUCCCUGGCUCCCACACCAGUGGUGUGUCAAGAAGGAUGGUCCGGGCCCCUGUUGGCUCAGCGCCUGGUACCAGCUUCCUUGGGUCAGAGCCAGCCCGGGAUA2000000006ACAGCCUCUUUGUGCCCACCCCAGUGCAGAGAGGGGCCCUGGUCCUCA2000000009UCCAUGGAGAAGUGGUACACAAGAGCAAGCAGAACCUCUCUGACCGCUCGCGCCAGGCCUACACUUUCCACCUCAUGGAGGCCUCUGGCACCACCUGGAGCCCGGAGAACUGGCUCCAGCCAACAGCUGAACUGCCCUUUCCCCAACUGUACACCUAAAGGCUCUCGCAGGGCAGGAGCCCUCGCCCCUCCCGGGUGAAGCUGUGGGCUGUAA2000000006ACACCAGUGCCUUGCUCAGCCUCCUGGUUGCAACAGGGAGGUCUUGUCUCCCCUCCUGGGCUUUCCUCCUGCCCUGUGGGCAGCAGCCUAGGCUGGGUCAGGGGCUUCCCUAAGAUCUUCACCUCUCUGCCUCCCUACUGCCCCAACAUAGCCUUGAGGAGGCUUCUCAGCCACCAAAGGGUUCUGGCCCCUUCUCACUCUCCUCUCCUCUCAGAUGGAACUCUGGUUAUUAUGGUGUUAGUUAUCGAAUAAAAACGACUUCAGAAUGCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	116	844	892	1105
Modification Positions	m5C	m6A	Y	m6A
Genomic Coordinates	9:128921968:+	9:128940683:+	9:128941460:+	9:128941769:+
Level of Experimental Evidence	3	3	3	3
Level of Experimental Reliability	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	4RW3xrzJ5VQa Er3yHVFp6tX8 JBTYPMm6qNsy KyXZuxKVckYS bvmqLAbo2zqf	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8