Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000265382
Gene ID: ENSG00000107242
Gene Name: PIP5K1B
Sequence (UNICHARACTER ENCODING) CUCUCUGCGCCUCGCUCCGACUCCGGCGCGCACCAAGCGGGAACCCGCGCCCGAGCCCGGCGGGCGCCGCUGCUGCUCCUCUCGGUCCCCGGUUCCCGGUCCCCGAACGCGCCGCGGCGAGGCUGCGCCCGGCAGUGGAGCCGCUCGGAGCUGCUGGGCUUUGGCGGCCGCUCGCUGCUCCGUCUGGCCGGAGGACCGGCGGGGAAGGAAGGGGAAAGCGGGGACACACACACUCGCCGCGGCGCGCGCGCACUGCACACUCGUAGCCGCGCGCCCCCGCCAAGGCGCGUCCGGAGCGAGUUUGGCCCCGCGGCUCCAGCCCCGGCACCUGCCCGCCCUCAGCGUUGCCCCCGGCCCCGGCCCCGCCCGCCGCCCCCUCCGCCCUCCCGCCCCUCCCGCCCCUCCCGCCCCUCGCCUGCACUGCUCUCCCUUCGCUGUGGGGAAGCGACAACGUCCCGAUAACUUGCAGACUGUGGCGCAACUGGUCUUGGUAGCGGAGGCACCCGAAUGCUGCCCGGGUGAGAUGAGGAAGCCAAGGCCCAGCAGAGCUGAGAUGUGACUGCAGAGCCGUCCAACCCCAGUCCUGUGACCUUUCUCUGGUGCCUGAUACCUCUCAGCAUUUGAGGGCCUUUUCUCUUCCUGCUUCAUCUCUAAAGGUCCUUCUAGGAGAGAGGUGAAAGAAACCUGGCAAAGAAAACGGUCUCGACAAUGAGUAGGCCACCCAUCACUACUAACUACAGAUGACUUGCCAUUUCAUUUACAAAGAUGUCUUCUGCUGCUGAAAAUGGAGAGGCAGCACCUGGAAAACAAAAUGAAGAAAAAACCUAUAAAAAGACUGCAUCAUCUGCUAUUAAAGGUGCUAUUCAGCUGGGAAUAGGAUACACAGUGGGUAAUCUCACUUCCAAGCCAGAACGAGAUGUUCUUAUGCAAGACUUUUAUGUGGUGGAAAGUGUGUUCCUACCCAGCGAAGGGAGCAAUCUGACCCCAGCACAUCACUACCCAGACUUUAGAUUUAAGACAUACGCUCCAUUAGCAUUCCGAUAUUUCAGAGAACUUUUUGGUAUCAAGCCUGAUGAUUACUUGUAUUCCAUCUGCAGUGAACCUCUAAUAGAACUGUCUAACCCUGGAGCCAGUGGAUCCUUGUUUUUUGUGACCAGUGAUGAUGAAUUUAUCAUCAAAACAGUUCAGCACAAAGAAGCUGAGUUUCUUCAGAAGCUACUGCCAGGCUAUUACAUGAAUUUAAACCAGAAUCCAAGGACUCUUUUGCCAAAAUUUUACGGЖCUGUAUUGUAUGCAAUCAGGAGGCAUUAAUAUCAGGAUUGUGGUGAUGAACAACGUUUUGCCACGCUCCAUGAGAAUGCACUUUACAUAUGACUUGAAAGGCUCAACGUAUAAGCGAAGAGCAUCCCGUAAAGAGAGAGAGAAAUCCAACCCCACAUUUAAGGACUUAGAUUUCCUGCAAGACAUGCACGAAGGGUUGUAUUUUGAUACGGAAACAUACAACGCGCUUAUGAAAACACUUCAGAGAGACUGCCGGGUGCUAGAAAGCUUCAAGAUCAUGGAUUAUAGCCUUCUGUUGGGAAUUCAUUUCCUGGACCAUUCCCUCAAAGAGAAAGAGGAGGAGACCCCACAAAAUGUGCCUGAUGCUAAGCGGACUGGGAUGCAGAAGGUUCUCUACUCAACAGCCAUGGAAUCUAUCCAGGGUCCAGGGAAAUCUGGAGAUGGGAUAAUCACAGAGAACCCAGACACAAUGGGAGGCAUUCCAGCUAAAAGCCAUAGGGGAGAAAAACUACUUUUAUUUAUGGGCAUUAUUGACAUUCUGCAAUCAUAUAGGUUAAUGAAGAAGUUAGAACAUUCCUGGAAAGCUCUUGUUUAUGAUGGGGACACUGUUUCUGUUCAUAGACCAAGCUUUUAUGCAGACAGAUUUCUUAAGUUCAUGAAUUCCAGAGUUUUCAAGAAAAUUCAAGCUUUGAAGGCUUCACCGUCUAAGAAACGGUGCAAUUCAAUCGCCGCCCUAAAGGCCACUUCACAGGAGAUUGUGUCCUCAAUUAGCCAGGAAUGGAAGGAUGAGAAGCGGGAUUUGCUGACUGAAGGACAAAGUUUUAGCAGCCUUGAUGAAGAAGCCCUGGGAUCCCGA?ACAGGCCAGACCUGGUCCCUAGCACUCCAUCACUGUUUGAAGCUGCUUCCUUGGCAACCACAAUUUCAUCUUCUUCCUUAUACGUCAAUGAGCACUAUCCACACGACAGGCCUACACUCUAUUCAAACAGCAAAGGGUUACCUUCCAGUUCAACAUUUACCUUGGAAGAGGGGACCAUCUACUUGACCGCUGAGCCCAACACUCUGGAAGUGCAGGAUGACAAUGCUUCUGUGCUUGACGUCUAUUUAUAAGUGAAAAUGGUGAUCACCUAAGCACAUGGAUGAGACGUGAGCACAGUUAUGGCAGAGAAGUUUCUCCGCACCAGAAUUAUCCACAGCAACUUGGCUGAGCCCCACUACACACAGAGAAAUCAUCAACCUGACUUAAGAGUUUUCAAGAUGUCAACUUCAGGCUGAUCAGCAGAUGGGAUGUGAAAAAUACUACCCUAUUCUAUCAUUUGCUGUUGCUUGCUGAACUGUGAAGAACUGCAUGAЖCUAUAUUUAAGCUGCUUUCUGUACCAUUGCCAAUCACCUUUUUGGAGUUGGAAGUGCUAUUUUCCUAUGGЖCUUUUGCAUUAUUUCAUUGUGCAUGCAUCCAGUGAUUAUACAUAAGCAACAUAUGUAAUCUGCUUAUAUAUUUUUAAAAAUCCAUCCACACACAUGGUAAAUUAAGUAUAAAUUCUUUUGCAAAAUUAUAGUUCAUGUCAUUGAAAGUUUAAAUUGGUUUCAUUUAAAGAUCAAUAUACUAGGUCUGCCUUCACUUUAUAGAAAACUAGCUUCUAUAAAGAUUUUUUCACUGUUUACUAGUGAAAUGAGAAAAGCAAAGCUAUUUAUAAAAGGCCUUAUGUCGUGUACAUACAUUGUCUUUGAAAUAUUUGUGAUCUAGUUUAUUGCUUGUAAAAGAGAAAUUAUAUAAUUUAUUUAGUAAAUACUACUGUAAACUAUAGUUUUGUGAGAGAAAUAAAAUAUUUUGUUCUCAA
Sequence (SHORT NAMES ENCODING) CUCUCUGCGCCUCGCUCCGACUCCGGCGCGCACCAAGCGGGAACCCGCGCCCGAGCCCGGCGGGCGCCGCUGCUGCUCCUCUCGGUCCCCGGUUCCCGGUCCCCGAACGCGCCGCGGCGAGGCUGCGCCCGGCAGUGGAGCCGCUCGGAGCUGCUGGGCUUUGGCGGCCGCUCGCUGCUCCGUCUGGCCGGAGGACCGGCGGGGAAGGAAGGGGAAAGCGGGGACACACACACUCGCCGCGGCGCGCGCGCACUGCACACUCGUAGCCGCGCGCCCCCGCCAAGGCGCGUCCGGAGCGAGUUUGGCCCCGCGGCUCCAGCCCCGGCACCUGCCCGCCCUCAGCGUUGCCCCCGGCCCCGGCCCCGCCCGCCGCCCCCUCCGCCCUCCCGCCCCUCCCGCCCCUCCCGCCCCUCGCCUGCACUGCUCUCCCUUCGCUGUGGGGAAGCGACAACGUCCCGAUAACUUGCAGACUGUGGCGCAACUGGUCUUGGUAGCGGAGGCACCCGAAUGCUGCCCGGGUGAGAUGAGGAAGCCAAGGCCCAGCAGAGCUGAGAUGUGACUGCAGAGCCGUCCAACCCCAGUCCUGUGACCUUUCUCUGGUGCCUGAUACCUCUCAGCAUUUGAGGGCCUUUUCUCUUCCUGCUUCAUCUCUAAAGGUCCUUCUAGGAGAGAGGUGAAAGAAACCUGGCAAAGAAAACGGUCUCGACAAUGAGUAGGCCACCCAUCACUACUAACUACAGAUGACUUGCCAUUUCAUUUACAAAGAUGUCUUCUGCUGCUGAAAAUGGAGAGGCAGCACCUGGAAAACAAAAUGAAGAAAAAACCUAUAAAAAGACUGCAUCAUCUGCUAUUAAAGGUGCUAUUCAGCUGGGAAUAGGAUACACAGUGGGUAAUCUCACUUCCAAGCCAGAACGAGAUGUUCUUAUGCAAGACUUUUAUGUGGUGGAAAGUGUGUUCCUACCCAGCGAAGGGAGCAAUCUGACCCCAGCACAUCACUACCCAGACUUUAGAUUUAAGACAUACGCUCCAUUAGCAUUCCGAUAUUUCAGAGAACUUUUUGGUAUCAAGCCUGAUGAUUACUUGUAUUCCAUCUGCAGUGAACCUCUAAUAGAACUGUCUAACCCUGGAGCCAGUGGAUCCUUGUUUUUUGUGACCAGUGAUGAUGAAUUUAUCAUCAAAACAGUUCAGCACAAAGAAGCUGAGUUUCUUCAGAAGCUACUGCCAGGCUAUUACAUGAAUUUAAACCAGAAUCCAAGGACUCUUUUGCCAAAAUUUUACGGm6ACUGUAUUGUAUGCAAUCAGGAGGCAUUAAUAUCAGGAUUGUGGUGAUGAACAACGUUUUGCCACGCUCCAUGAGAAUGCACUUUACAUAUGACUUGAAAGGCUCAACGUAUAAGCGAAGAGCAUCCCGUAAAGAGAGAGAGAAAUCCAACCCCACAUUUAAGGACUUAGAUUUCCUGCAAGACAUGCACGAAGGGUUGUAUUUUGAUACGGAAACAUACAACGCGCUUAUGAAAACACUUCAGAGAGACUGCCGGGUGCUAGAAAGCUUCAAGAUCAUGGAUUAUAGCCUUCUGUUGGGAAUUCAUUUCCUGGACCAUUCCCUCAAAGAGAAAGAGGAGGAGACCCCACAAAAUGUGCCUGAUGCUAAGCGGACUGGGAUGCAGAAGGUUCUCUACUCAACAGCCAUGGAAUCUAUCCAGGGUCCAGGGAAAUCUGGAGAUGGGAUAAUCACAGAGAACCCAGACACAAUGGGAGGCAUUCCAGCUAAAAGCCAUAGGGGAGAAAAACUACUUUUAUUUAUGGGCAUUAUUGACAUUCUGCAAUCAUAUAGGUUAAUGAAGAAGUUAGAACAUUCCUGGAAAGCUCUUGUUUAUGAUGGGGACACUGUUUCUGUUCAUAGACCAAGCUUUUAUGCAGACAGAUUUCUUAAGUUCAUGAAUUCCAGAGUUUUCAAGAAAAUUCAAGCUUUGAAGGCUUCACCGUCUAAGAAACGGUGCAAUUCAAUCGCCGCCCUAAAGGCCACUUCACAGGAGAUUGUGUCCUCAAUUAGCCAGGAAUGGAAGGAUGAGAAGCGGGAUUUGCUGACUGAAGGACAAAGUUUUAGCAGCCUUGAUGAAGAAGCCCUGGGAUCCCGAm5CACAGGCCAGACCUGGUCCCUAGCACUCCAUCACUGUUUGAAGCUGCUUCCUUGGCAACCACAAUUUCAUCUUCUUCCUUAUACGUCAAUGAGCACUAUCCACACGACAGGCCUACACUCUAUUCAAACAGCAAAGGGUUACCUUCCAGUUCAACAUUUACCUUGGAAGAGGGGACCAUCUACUUGACCGCUGAGCCCAACACUCUGGAAGUGCAGGAUGACAAUGCUUCUGUGCUUGACGUCUAUUUAUAAGUGAAAAUGGUGAUCACCUAAGCACAUGGAUGAGACGUGAGCACAGUUAUGGCAGAGAAGUUUCUCCGCACCAGAAUUAUCCACAGCAACUUGGCUGAGCCCCACUACACACAGAGAAAUCAUCAACCUGACUUAAGAGUUUUCAAGAUGUCAACUUCAGGCUGAUCAGCAGAUGGGAUGUGAAAAAUACUACCCUAUUCUAUCAUUUGCUGUUGCUUGCUGAACUGUGAAGAACUGCAUGAm6ACUAUAUUUAAGCUGCUUUCUGUACCAUUGCCAAUCACCUUUUUGGAGUUGGAAGUGCUAUUUUCCUAUGGm6ACUUUUGCAUUAUUUCAUUGUGCAUGCAUCCAGUGAUUAUACAUAAGCAACAUAUGUAAUCUGCUUAUAUAUUUUUAAAAAUCCAUCCACACACAUGGUAAAUUAAGUAUAAAUUCUUUUGCAAAAUUAUAGUUCAUGUCAUUGAAAGUUUAAAUUGGUUUCAUUUAAAGAUCAAUAUACUAGGUCUGCCUUCACUUUAUAGAAAACUAGCUUCUAUAAAGAUUUUUUCACUGUUUACUAGUGAAAUGAGAAAAGCAAAGCUAUUUAUAAAAGGCCUUAUGUCGUGUACAUACAUUGUCUUUGAAAUAUUUGUGAUCUAGUUUAUUGCUUGUAAAAGAGAAAUUAUAUAAUUUAUUUAGUAAAUACUACUGUAAACUAUAGUUUUGUGAGAGAAAUAAAAUAUUUUGUUCUCAA
Sequence (MODOMICS CODE ENCODING) CUCUCUGCGCCUCGCUCCGACUCCGGCGCGCACCAAGCGGGAACCCGCGCCCGAGCCCGGCGGGCGCCGCUGCUGCUCCUCUCGGUCCCCGGUUCCCGGUCCCCGAACGCGCCGCGGCGAGGCUGCGCCCGGCAGUGGAGCCGCUCGGAGCUGCUGGGCUUUGGCGGCCGCUCGCUGCUCCGUCUGGCCGGAGGACCGGCGGGGAAGGAAGGGGAAAGCGGGGACACACACACUCGCCGCGGCGCGCGCGCACUGCACACUCGUAGCCGCGCGCCCCCGCCAAGGCGCGUCCGGAGCGAGUUUGGCCCCGCGGCUCCAGCCCCGGCACCUGCCCGCCCUCAGCGUUGCCCCCGGCCCCGGCCCCGCCCGCCGCCCCCUCCGCCCUCCCGCCCCUCCCGCCCCUCCCGCCCCUCGCCUGCACUGCUCUCCCUUCGCUGUGGGGAAGCGACAACGUCCCGAUAACUUGCAGACUGUGGCGCAACUGGUCUUGGUAGCGGAGGCACCCGAAUGCUGCCCGGGUGAGAUGAGGAAGCCAAGGCCCAGCAGAGCUGAGAUGUGACUGCAGAGCCGUCCAACCCCAGUCCUGUGACCUUUCUCUGGUGCCUGAUACCUCUCAGCAUUUGAGGGCCUUUUCUCUUCCUGCUUCAUCUCUAAAGGUCCUUCUAGGAGAGAGGUGAAAGAAACCUGGCAAAGAAAACGGUCUCGACAAUGAGUAGGCCACCCAUCACUACUAACUACAGAUGACUUGCCAUUUCAUUUACAAAGAUGUCUUCUGCUGCUGAAAAUGGAGAGGCAGCACCUGGAAAACAAAAUGAAGAAAAAACCUAUAAAAAGACUGCAUCAUCUGCUAUUAAAGGUGCUAUUCAGCUGGGAAUAGGAUACACAGUGGGUAAUCUCACUUCCAAGCCAGAACGAGAUGUUCUUAUGCAAGACUUUUAUGUGGUGGAAAGUGUGUUCCUACCCAGCGAAGGGAGCAAUCUGACCCCAGCACAUCACUACCCAGACUUUAGAUUUAAGACAUACGCUCCAUUAGCAUUCCGAUAUUUCAGAGAACUUUUUGGUAUCAAGCCUGAUGAUUACUUGUAUUCCAUCUGCAGUGAACCUCUAAUAGAACUGUCUAACCCUGGAGCCAGUGGAUCCUUGUUUUUUGUGACCAGUGAUGAUGAAUUUAUCAUCAAAACAGUUCAGCACAAAGAAGCUGAGUUUCUUCAGAAGCUACUGCCAGGCUAUUACAUGAAUUUAAACCAGAAUCCAAGGACUCUUUUGCCAAAAUUUUACGG2000000006ACUGUAUUGUAUGCAAUCAGGAGGCAUUAAUAUCAGGAUUGUGGUGAUGAACAACGUUUUGCCACGCUCCAUGAGAAUGCACUUUACAUAUGACUUGAAAGGCUCAACGUAUAAGCGAAGAGCAUCCCGUAAAGAGAGAGAGAAAUCCAACCCCACAUUUAAGGACUUAGAUUUCCUGCAAGACAUGCACGAAGGGUUGUAUUUUGAUACGGAAACAUACAACGCGCUUAUGAAAACACUUCAGAGAGACUGCCGGGUGCUAGAAAGCUUCAAGAUCAUGGAUUAUAGCCUUCUGUUGGGAAUUCAUUUCCUGGACCAUUCCCUCAAAGAGAAAGAGGAGGAGACCCCACAAAAUGUGCCUGAUGCUAAGCGGACUGGGAUGCAGAAGGUUCUCUACUCAACAGCCAUGGAAUCUAUCCAGGGUCCAGGGAAAUCUGGAGAUGGGAUAAUCACAGAGAACCCAGACACAAUGGGAGGCAUUCCAGCUAAAAGCCAUAGGGGAGAAAAACUACUUUUAUUUAUGGGCAUUAUUGACAUUCUGCAAUCAUAUAGGUUAAUGAAGAAGUUAGAACAUUCCUGGAAAGCUCUUGUUUAUGAUGGGGACACUGUUUCUGUUCAUAGACCAAGCUUUUAUGCAGACAGAUUUCUUAAGUUCAUGAAUUCCAGAGUUUUCAAGAAAAUUCAAGCUUUGAAGGCUUCACCGUCUAAGAAACGGUGCAAUUCAAUCGCCGCCCUAAAGGCCACUUCACAGGAGAUUGUGUCCUCAAUUAGCCAGGAAUGGAAGGAUGAGAAGCGGGAUUUGCUGACUGAAGGACAAAGUUUUAGCAGCCUUGAUGAAGAAGCCCUGGGAUCCCGA2000000005CACAGGCCAGACCUGGUCCCUAGCACUCCAUCACUGUUUGAAGCUGCUUCCUUGGCAACCACAAUUUCAUCUUCUUCCUUAUACGUCAAUGAGCACUAUCCACACGACAGGCCUACACUCUAUUCAAACAGCAAAGGGUUACCUUCCAGUUCAACAUUUACCUUGGAAGAGGGGACCAUCUACUUGACCGCUGAGCCCAACACUCUGGAAGUGCAGGAUGACAAUGCUUCUGUGCUUGACGUCUAUUUAUAAGUGAAAAUGGUGAUCACCUAAGCACAUGGAUGAGACGUGAGCACAGUUAUGGCAGAGAAGUUUCUCCGCACCAGAAUUAUCCACAGCAACUUGGCUGAGCCCCACUACACACAGAGAAAUCAUCAACCUGACUUAAGAGUUUUCAAGAUGUCAACUUCAGGCUGAUCAGCAGAUGGGAUGUGAAAAAUACUACCCUAUUCUAUCAUUUGCUGUUGCUUGCUGAACUGUGAAGAACUGCAUGA2000000006ACUAUAUUUAAGCUGCUUUCUGUACCAUUGCCAAUCACCUUUUUGGAGUUGGAAGUGCUAUUUUCCUAUGG2000000006ACUUUUGCAUUAUUUCAUUGUGCAUGCAUCCAGUGAUUAUACAUAAGCAACAUAUGUAAUCUGCUUAUAUAUUUUUAAAAAUCCAUCCACACACAUGGUAAAUUAAGUAUAAAUUCUUUUGCAAAAUUAUAGUUCAUGUCAUUGAAAGUUUAAAUUGGUUUCAUUUAAAGAUCAAUAUACUAGGUCUGCCUUCACUUUAUAGAAAACUAGCUUCUAUAAAGAUUUUUUCACUGUUUACUAGUGAAAUGAGAAAAGCAAAGCUAUUUAUAAAAGGCCUUAUGUCGUGUACAUACAUUGUCUUUGAAAUAUUUGUGAUCUAGUUUAUUGCUUGUAAAAGAGAAAUUAUAUAAUUUAUUUAGUAAAUACUACUGUAAACUAUAGUUUUGUGAGAGAAAUAAAAUAUUUUGUUCUCAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1281 2137 2631 2702
Modification Positions m6A m5C m6A m6A
Genomic Coordinates 9:68894383:+ 9:68940660:+ 9:69008692:+ 9:69008763:+
Level of Experimental Evidence 3 3 3 3
Level of Experimental Reliability 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs gZuvgwMuBfgh
jNkxUQNx8GRd
VL7zkHvkfkoB
WdHxkJGRmFxn
nfCHyrYzE6fB
Er3yHVFp6tX8
KyXZuxKVckYS
4Hod8ruppnD2
5tjPWDS39J3i
9De2LACts9mj
BnpqjwVeTStU
VL7zkHvkfkoB
WdHxkJGRmFxn
dknfVe6BK8aP
VL7zkHvkfkoB
Lny8GcCeVGc9
dknfVe6BK8aP