General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000380715
Gene ID:	ENSG00000164985
Gene Name:	PSIP1
Sequence (UNICHARACTER ENCODING)	GCCGAGCGGGAGCCGCGCGGGAGCAGCGCAGCUACGGCGGCGGCAGCGGCGGCGCGGUUGCGAUUCCGAGCCGUUGAGACGCCUCUGCGGCAGCUGGUGGCGCAGGUGGCUUGCGUGGACGCGGGUAGAGGCGACCGGCCAGCAACCGCAGCGUCGGCGCCCGCGGCCCCGGCAGGCGCGUCGGGACGCCCCGAGGCAUCCUCCCCCGCCCGCGGGCCCGGUAGCUGGGCCCGCGUCCGCCGCCCGCAUCCCCGCGCCGCCGCAUCUCCUCGCCGCCUCCCGGGCUUCGGACCCCCGGUCUCGCCCCCGAAACAUGACUCGCGAUUUCAAACCUGGAGЖCCUCAUCUUCGCCAAGAUGAAAGGUUAUCCCCAUUGGCCAGCUCGAGUAGACGAAGUUCCUGAUGGAGCUGUAAAGCCACCCACAAACAAACUACCCAUUUUCUUUUUUGGAACUCAUGAGACUGCUUUUUUAGGACCAAAGGAUAUAUUUCCUUACUCAGAAAAUAAGGAAAAGUAUGGCAAACCAAAUAAAAGAAAAGGUUUUAAUGAAGGUUUAUGGGAGAUAGAUAACAAUCCAAAAGUGAAAUUUUCAAGUCAACAGGCAGCAACUAAACAAUCAAAUGCAUCAUCUGAUGUUGAAGUUGAAGAAAAGGAAACUAGUGUUUCAAAGGAAGAUACCGACCAUGAAGAAAAAGCCAGCAAUGAGGAUGUGACUAAAGCAGUUGACAUAЖCUACUCCAAAAGCUGCCAGAAGGGGGAGAAAGAGAAAGGCAGAAAAACAAGUAGAAACUGAGGAGGCAGGAGUAGUGACAACAGCAACAGCAUCUGUUAAUCUAAAAGUGAGUCCUAAAAGAGGACGACCUGCAGCUACЖGAAGUCAAGAUUCCAAAACCAAGAGGCAGACCCAAAAUGGUAAAЖCAGCCCUGUCCUUCAGAGAGUGACAUCAUUACUGAAGAGGACAAAAGUAAGAAAAAGGGGCAAGAGGAAAAACAACCUAAAAAGCAGCCUAAGAAGGAUGAAGAGGGCCAGAAGGAAGAAGAUAAGCCAAGAAAAGAGCBGGAUAAAAAAGAGGGGAAGAAAGAAGUUGAAUCAAAAAGGAAAAAUUUAGCUAAAACAGGGGUUACUUCAACCUCCGAUUCUGAAGAAGAAGGAGAUGAUCAAGAAGGUGAAAAGAAGAGAAAAGGUGGGAGGAACUUUCAGACUGCUCACAGAAGGAAUAUGCUGAAAGGCCAACAUGAGAAAGAAGCAGCAGAUCGAAAACGCAAGCAAGAGGAACAAAUGGAAACUGAGCAUUUUGCUCUGUAAAGCAUUUCAGAUGCAGCUUGUGUGAAAUGCAUUAUGCAAAAUAAAGUUUAUUGUAUUGUAUUCCCAGCCAAACAACAUGUAAUCUACЖGUAAUAAAAAAUAUAUCUCAUUUUGGGCUCAAAGCAUUAAUCCAGUUACUGAAAAGAGAAUACAAGUGGAGCAAACAAGAGAUGAAGAUCUUGAUACAGACUCAUUGGЖCUGAAUUUCCCCCUUCCCCCCAUUGAUGGAAGAAUGUUCCAGAUUCUAAAUUGAGGЖCUUCAUUAUUAAUGGCAUUACUGUGUUAUGAUUAACAAAUUUCCUGUAAGGUACACACUACAUACUAAGGUCGGCCAUCAUUCCUGUUUUUUUUUUUUUUUUUUUUUUUUAACCAAGCUUAAAAUGAAGCUUUGUGUUUGAAAGUAAUAACAAGCUCAGACGAAGAUGGUGGUUGUACAUUAUUCAUCUAGAAAAUAUAAAAAUUCAUUUUGUUUUGAAGCUAGUUAUUAAЖCUGGAAUAGCAGUUAUAUCCCUGAGAAUGGGGCCCUUCUCUUGACAUUCCUUUGUUGUUUAAUUCUPUAGAAUCUUAAUAAAUGUUUUUUUAAUCCUGAGAGAUUAAЖCAGUAGUAGACUUGUUAAGAAUGAAACUGUAACCAAAAUUUUAAAAUAAAGUUUUUUUUAAAAAAAAAA
Sequence (SHORT NAMES ENCODING)	GCCGAGCGGGAGCCGCGCGGGAGCAGCGCAGCUACGGCGGCGGCAGCGGCGGCGCGGUUGCGAUUCCGAGCCGUUGAGACGCCUCUGCGGCAGCUGGUGGCGCAGGUGGCUUGCGUGGACGCGGGUAGAGGCGACCGGCCAGCAACCGCAGCGUCGGCGCCCGCGGCCCCGGCAGGCGCGUCGGGACGCCCCGAGGCAUCCUCCCCCGCCCGCGGGCCCGGUAGCUGGGCCCGCGUCCGCCGCCCGCAUCCCCGCGCCGCCGCAUCUCCUCGCCGCCUCCCGGGCUUCGGACCCCCGGUCUCGCCCCCGAAACAUGACUCGCGAUUUCAAACCUGGAGm6ACCUCAUCUUCGCCAAGAUGAAAGGUUAUCCCCAUUGGCCAGCUCGAGUAGACGAAGUUCCUGAUGGAGCUGUAAAGCCACCCACAAACAAACUACCCAUUUUCUUUUUUGGAACUCAUGAGACUGCUUUUUUAGGACCAAAGGAUAUAUUUCCUUACUCAGAAAAUAAGGAAAAGUAUGGCAAACCAAAUAAAAGAAAAGGUUUUAAUGAAGGUUUAUGGGAGAUAGAUAACAAUCCAAAAGUGAAAUUUUCAAGUCAACAGGCAGCAACUAAACAAUCAAAUGCAUCAUCUGAUGUUGAAGUUGAAGAAAAGGAAACUAGUGUUUCAAAGGAAGAUACCGACCAUGAAGAAAAAGCCAGCAAUGAGGAUGUGACUAAAGCAGUUGACAUAm6ACUACUCCAAAAGCUGCCAGAAGGGGGAGAAAGAGAAAGGCAGAAAAACAAGUAGAAACUGAGGAGGCAGGAGUAGUGACAACAGCAACAGCAUCUGUUAAUCUAAAAGUGAGUCCUAAAAGAGGACGACCUGCAGCUACm6AGAAGUCAAGAUUCCAAAACCAAGAGGCAGACCCAAAAUGGUAAAm6ACAGCCCUGUCCUUCAGAGAGUGACAUCAUUACUGAAGAGGACAAAAGUAAGAAAAAGGGGCAAGAGGAAAAACAACCUAAAAAGCAGCCUAAGAAGGAUGAAGAGGGCCAGAAGGAAGAAGAUAAGCCAAGAAAAGAGCCmGGAUAAAAAAGAGGGGAAGAAAGAAGUUGAAUCAAAAAGGAAAAAUUUAGCUAAAACAGGGGUUACUUCAACCUCCGAUUCUGAAGAAGAAGGAGAUGAUCAAGAAGGUGAAAAGAAGAGAAAAGGUGGGAGGAACUUUCAGACUGCUCACAGAAGGAAUAUGCUGAAAGGCCAACAUGAGAAAGAAGCAGCAGAUCGAAAACGCAAGCAAGAGGAACAAAUGGAAACUGAGCAUUUUGCUCUGUAAAGCAUUUCAGAUGCAGCUUGUGUGAAAUGCAUUAUGCAAAAUAAAGUUUAUUGUAUUGUAUUCCCAGCCAAACAACAUGUAAUCUACm6AGUAAUAAAAAAUAUAUCUCAUUUUGGGCUCAAAGCAUUAAUCCAGUUACUGAAAAGAGAAUACAAGUGGAGCAAACAAGAGAUGAAGAUCUUGAUACAGACUCAUUGGm6ACUGAAUUUCCCCCUUCCCCCCAUUGAUGGAAGAAUGUUCCAGAUUCUAAAUUGAGGm6ACUUCAUUAUUAAUGGCAUUACUGUGUUAUGAUUAACAAAUUUCCUGUAAGGUACACACUACAUACUAAGGUCGGCCAUCAUUCCUGUUUUUUUUUUUUUUUUUUUUUUUUAACCAAGCUUAAAAUGAAGCUUUGUGUUUGAAAGUAAUAACAAGCUCAGACGAAGAUGGUGGUUGUACAUUAUUCAUCUAGAAAAUAUAAAAAUUCAUUUUGUUUUGAAGCUAGUUAUUAAm6ACUGGAAUAGCAGUUAUAUCCCUGAGAAUGGGGCCCUUCUCUUGACAUUCCUUUGUUGUUUAAUUCUYUAGAAUCUUAAUAAAUGUUUUUUUAAUCCUGAGAGAUUAAm6ACAGUAGUAGACUUGUUAAGAAUGAAACUGUAACCAAAAUUUUAAAAUAAAGUUUUUUUUAAAAAAAAAA
Sequence (MODOMICS CODE ENCODING)	GCCGAGCGGGAGCCGCGCGGGAGCAGCGCAGCUACGGCGGCGGCAGCGGCGGCGCGGUUGCGAUUCCGAGCCGUUGAGACGCCUCUGCGGCAGCUGGUGGCGCAGGUGGCUUGCGUGGACGCGGGUAGAGGCGACCGGCCAGCAACCGCAGCGUCGGCGCCCGCGGCCCCGGCAGGCGCGUCGGGACGCCCCGAGGCAUCCUCCCCCGCCCGCGGGCCCGGUAGCUGGGCCCGCGUCCGCCGCCCGCAUCCCCGCGCCGCCGCAUCUCCUCGCCGCCUCCCGGGCUUCGGACCCCCGGUCUCGCCCCCGAAACAUGACUCGCGAUUUCAAACCUGGAG2000000006ACCUCAUCUUCGCCAAGAUGAAAGGUUAUCCCCAUUGGCCAGCUCGAGUAGACGAAGUUCCUGAUGGAGCUGUAAAGCCACCCACAAACAAACUACCCAUUUUCUUUUUUGGAACUCAUGAGACUGCUUUUUUAGGACCAAAGGAUAUAUUUCCUUACUCAGAAAAUAAGGAAAAGUAUGGCAAACCAAAUAAAAGAAAAGGUUUUAAUGAAGGUUUAUGGGAGAUAGAUAACAAUCCAAAAGUGAAAUUUUCAAGUCAACAGGCAGCAACUAAACAAUCAAAUGCAUCAUCUGAUGUUGAAGUUGAAGAAAAGGAAACUAGUGUUUCAAAGGAAGAUACCGACCAUGAAGAAAAAGCCAGCAAUGAGGAUGUGACUAAAGCAGUUGACAUA2000000006ACUACUCCAAAAGCUGCCAGAAGGGGGAGAAAGAGAAAGGCAGAAAAACAAGUAGAAACUGAGGAGGCAGGAGUAGUGACAACAGCAACAGCAUCUGUUAAUCUAAAAGUGAGUCCUAAAAGAGGACGACCUGCAGCUAC2000000006AGAAGUCAAGAUUCCAAAACCAAGAGGCAGACCCAAAAUGGUAAA2000000006ACAGCCCUGUCCUUCAGAGAGUGACAUCAUUACUGAAGAGGACAAAAGUAAGAAAAAGGGGCAAGAGGAAAAACAACCUAAAAAGCAGCCUAAGAAGGAUGAAGAGGGCCAGAAGGAAGAAGAUAAGCCAAGAAAAGAGC2000000090CGGAUAAAAAAGAGGGGAAGAAAGAAGUUGAAUCAAAAAGGAAAAAUUUAGCUAAAACAGGGGUUACUUCAACCUCCGAUUCUGAAGAAGAAGGAGAUGAUCAAGAAGGUGAAAAGAAGAGAAAAGGUGGGAGGAACUUUCAGACUGCUCACAGAAGGAAUAUGCUGAAAGGCCAACAUGAGAAAGAAGCAGCAGAUCGAAAACGCAAGCAAGAGGAACAAAUGGAAACUGAGCAUUUUGCUCUGUAAAGCAUUUCAGAUGCAGCUUGUGUGAAAUGCAUUAUGCAAAAUAAAGUUUAUUGUAUUGUAUUCCCAGCCAAACAACAUGUAAUCUAC2000000006AGUAAUAAAAAAUAUAUCUCAUUUUGGGCUCAAAGCAUUAAUCCAGUUACUGAAAAGAGAAUACAAGUGGAGCAAACAAGAGAUGAAGAUCUUGAUACAGACUCAUUGG2000000006ACUGAAUUUCCCCCUUCCCCCCAUUGAUGGAAGAAUGUUCCAGAUUCUAAAUUGAGG2000000006ACUUCAUUAUUAAUGGCAUUACUGUGUUAUGAUUAACAAAUUUCCUGUAAGGUACACACUACAUACUAAGGUCGGCCAUCAUUCCUGUUUUUUUUUUUUUUUUUUUUUUUUAACCAAGCUUAAAAUGAAGCUUUGUGUUUGAAAGUAAUAACAAGCUCAGACGAAGAUGGUGGUUGUACAUUAUUCAUCUAGAAAAUAUAAAAAUUCAUUUUGUUUUGAAGCUAGUUAUUAA2000000006ACUGGAAUAGCAGUUAUAUCCCUGAGAAUGGGGCCCUUCUCUUGACAUUCCUUUGUUGUUUAAUUCU2000000009UUAGAAUCUUAAUAAAUGUUUUUUUAAUCCUGAGAGAUUAA2000000006ACAGUAGUAGACUUGUUAAGAAUGAAACUGUAACCAAAAUUUUAAAAUAAAGUUUUUUUUAAAAAAAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	339	731	871	916	1056	1391	1500	1557	1789	1856	1897
Modification Positions	m6A	m6A	m6A	m6A	Cm	m6A	m6A	m6A	m6A	Y	m6A
Genomic Coordinates	9:15510163:-	9:15486044:-	9:15478548:-	9:15478503:-	9:15474124:-	9:15471211:-	9:15471102:-	9:15471045:-	9:15470813:-	9:15470746:-	9:15470705:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP	jaSvBXBkn3xs YkSG92k4EHDM	3kRDPWwiRCgi L6w2k2VEv4EY	3TeAZFYFxgvp 6AyXsheySjfx Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8