General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000434095
Gene ID:	ENSG00000119383
Gene Name:	PTPA
Sequence (UNICHARACTER ENCODING)	GCUGGAGAGGCGCUCUGAGGCUCCUGGGGAGUCGGUGGGAACGACACCAGAAGCUCAGGUGGAGAUCUUAUCUUCCUGAGGCUGCUGGAUUUGGUGGGCGAUAGGAAUCAGGCCCCCUUUUUUUGGCUGUGGGAGAAAGAGGGGUGACUGCGGAUGAAGACUGGCCCAUUUGCAGAGCACUCCAACCAGCUGUGGAACAUCAGCGCCGUCCCUUCCUGGUCCAʍAGUGAACCAGGGUCUCAPCCGCAUGUAUAAGGCCGAGUGCCUGGAGAAGUUCCCUGUGAUCCAGCACUUCAAGUUCGGGAGCCUGCUGCCCAPCCAUCCUGUCACGUCGGGCUAGGAGGGGCCAAGCCGAAGAGCCACCCAGGCCACAGUUCCUGUGCCUGCCUUCCCCЖCCCCAGCAGUGGCCCCUCCCCAPCCCCUCCCUCUGUUCGUCCCGUUUGAUGAGAGGCUGUUUACUGGGGUGGGGUGGCGAGAUGGGCUUGAGGGGGCUCAGAGCAPAAGGCUUCAGGGCCCAAGUUGGGAGAAGUGACCAAAGUGUAGCCAGUUUUCUGAGUUCCCGUGUGCUAGACUGGCCAGAAGAGAGGGUCUGGGGCCUGGUCACUCGGCCACUCUCUCCUGUUUCUGGCCUCUUCUCCCUUCACUCCCGUCCAGUCUGGUUUUGAGAGCAGGGGCUGUUCUGCAGCACCGCAGGGAAGGGAGGAGAGAUACCUGCUGCUUCCAUUGCUUUUCCCUUCCUGGAGUCGAUGCCUUUCUAAGGGUUGGAGCUGCUCCUUGCAGGGGCGGGUCAGUUUCCCAGGCCAUGCCGGGGUGGCCAUCUAUGGUAGGGCUGGAAGCUGAGGCUGGCCGCCAGCUGUGGGCUGGGGUGGGG
Sequence (SHORT NAMES ENCODING)	GCUGGAGAGGCGCUCUGAGGCUCCUGGGGAGUCGGUGGGAACGACACCAGAAGCUCAGGUGGAGAUCUUAUCUUCCUGAGGCUGCUGGAUUUGGUGGGCGAUAGGAAUCAGGCCCCCUUUUUUUGGCUGUGGGAGAAAGAGGGGUGACUGCGGAUGAAGACUGGCCCAUUUGCAGAGCACUCCAACCAGCUGUGGAACAUCAGCGCCGUCCCUUCCUGGUCCAAmAGUGAACCAGGGUCUCAYCCGCAUGUAUAAGGCCGAGUGCCUGGAGAAGUUCCCUGUGAUCCAGCACUUCAAGUUCGGGAGCCUGCUGCCCAYCCAUCCUGUCACGUCGGGCUAGGAGGGGCCAAGCCGAAGAGCCACCCAGGCCACAGUUCCUGUGCCUGCCUUCCCCm6ACCCCAGCAGUGGCCCCUCCCCAYCCCCUCCCUCUGUUCGUCCCGUUUGAUGAGAGGCUGUUUACUGGGGUGGGGUGGCGAGAUGGGCUUGAGGGGGCUCAGAGCAYAAGGCUUCAGGGCCCAAGUUGGGAGAAGUGACCAAAGUGUAGCCAGUUUUCUGAGUUCCCGUGUGCUAGACUGGCCAGAAGAGAGGGUCUGGGGCCUGGUCACUCGGCCACUCUCUCCUGUUUCUGGCCUCUUCUCCCUUCACUCCCGUCCAGUCUGGUUUUGAGAGCAGGGGCUGUUCUGCAGCACCGCAGGGAAGGGAGGAGAGAUACCUGCUGCUUCCAUUGCUUUUCCCUUCCUGGAGUCGAUGCCUUUCUAAGGGUUGGAGCUGCUCCUUGCAGGGGCGGGUCAGUUUCCCAGGCCAUGCCGGGGUGGCCAUCUAUGGUAGGGCUGGAAGCUGAGGCUGGCCGCCAGCUGUGGGCUGGGGUGGGG
Sequence (MODOMICS CODE ENCODING)	GCUGGAGAGGCGCUCUGAGGCUCCUGGGGAGUCGGUGGGAACGACACCAGAAGCUCAGGUGGAGAUCUUAUCUUCCUGAGGCUGCUGGAUUUGGUGGGCGAUAGGAAUCAGGCCCCCUUUUUUUGGCUGUGGGAGAAAGAGGGGUGACUGCGGAUGAAGACUGGCCCAUUUGCAGAGCACUCCAACCAGCUGUGGAACAUCAGCGCCGUCCCUUCCUGGUCCA2000000090AAGUGAACCAGGGUCUCA2000000009UCCGCAUGUAUAAGGCCGAGUGCCUGGAGAAGUUCCCUGUGAUCCAGCACUUCAAGUUCGGGAGCCUGCUGCCCA2000000009UCCAUCCUGUCACGUCGGGCUAGGAGGGGCCAAGCCGAAGAGCCACCCAGGCCACAGUUCCUGUGCCUGCCUUCCCC2000000006ACCCCAGCAGUGGCCCCUCCCCA2000000009UCCCCUCCCUCUGUUCGUCCCGUUUGAUGAGAGGCUGUUUACUGGGGUGGGGUGGCGAGAUGGGCUUGAGGGGGCUCAGAGCA2000000009UAAGGCUUCAGGGCCCAAGUUGGGAGAAGUGACCAAAGUGUAGCCAGUUUUCUGAGUUCCCGUGUGCUAGACUGGCCAGAAGAGAGGGUCUGGGGCCUGGUCACUCGGCCACUCUCUCCUGUUUCUGGCCUCUUCUCCCUUCACUCCCGUCCAGUCUGGUUUUGAGAGCAGGGGCUGUUCUGCAGCACCGCAGGGAAGGGAGGAGAGAUACCUGCUGCUUCCAUUGCUUUUCCCUUCCUGGAGUCGAUGCCUUUCUAAGGGUUGGAGCUGCUCCUUGCAGGGGCGGGUCAGUUUCCCAGGCCAUGCCGGGGUGGCCAUCUAUGGUAGGGCUGGAAGCUGAGGCUGGCCGCCAGCUGUGGGCUGGGGUGGGG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	224	242	317	394	417	500
Modification Positions	Am	Y	Y	m6A	Y	Y
Genomic Coordinates	9:129142515:+	9:129142533:+	9:129147442:+	9:129147519:+	9:129147542:+	9:129147625:+
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi XUkp6ghERQML	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8