Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000693514
Gene ID: ENSG00000167110
Gene Name: GOLGA2
Sequence (UNICHARACTER ENCODING) GGGGCAGGUCGCUGCCGAUAUAUGACUCCAUUAUUUUGGUUCCAGAGCCGCUUUAUGGAGCUCAUGCAGGAGAAGGCAGACCUGAAGGAGAGGGUAGAGGAACUGGAACAUCGCUGCAUCCAGCUUUCUGGAGAGACAGACACCAUUGGAGAGUACAUUGCACUGUACCAGAGCCAGAGGGCAGUGCUGAAGGAGCGGCACCGGGAGAAGGAGGAGUACAUCAGCAGGCUGGCCCAAGACAAGGAGGAGAUGAAGGUGAAGCUGCUGGAGCUGCAGGAGCUGGUCUUACGGCUUGUGGGCGACCGCAACGAGUGGCAUGGCAGAUUCCUGGCAGCUGCCCAGAACCCUGCUGAUGAGCCCACUUCAGGGGCCCCAGCCCCCCAGGAACUUGGGGCUGCCAACCAGCAGGGUGAUCUUUGCGAGGUGAGCCUCGCCGGCAGUGUGGAGCCUGCCCAAGGAGAGGCCAGGGAGGGUUCUCCCCGUGACAACCCCACUGCACAGCAGAUCAUGCAGCUGCUUCGUGAGAUGCAGAACCCCCGGGAGCGCCCAGGCUUGGGCAGCAACCCCUGCAUUCCUUUUUUUUACCGGGCUGACGAGAAUGAUGAGGUGAAGAUCACUGUCAUCUAAAAGCCGGCUACUGUCAGCAAAGCCUGAAGAAGUGGGGCUGGAUACCCUGCCCCCACCAUAUCCCUACCAUCCCUUCUCAGUCAACCCUUUACCCUUACAGUAGCAAGCAUAGACCCCUGUCUAACGGGGGUAGACAGGUGCAGAUGAGGUGAAGAUCACUGUCAUCUAAAAGCUGGCCACUAAAUUAAAAAAAAAUUAAAAGUUAUGGGAUUAAAAAAAGUUAUGGGAUAAAAAAGGUUAUGGGUAACUUAUGGUAUAAAAGUUAUGAAAAAAGGCCAGGUGCAGUGGCUCACGCCUGUAAUCCCAGCACUUUUGGGAGGCUGAGGUUGGGAGUUCAAGACCAGCCUGGUCAACAUGGUGAAACUGUGUCUCUACUAAAAAUACAAAAAUUAGCCAGGCAUGGUGGCACGUGCCUGUAAUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCUGGGAGGUGGAGGUUGCAGUGGGCUGAGAUCACGCCAUUGCACUCCAGCCUGGGCGACAGAGUGAGACUCUGUCUCAAAAAAAAAAAAAAUUAUGAAAAAAGUUAUGGGAUUAAAGAAAGUCAGGAUAAAAAUUUUAAAAAGCAGGCCACUGUCAGCAAAGCCUGGAGAAGUGGGGCCGGAGGCUCCGCCCCCAUCAUGUGCCUGCCACCCCUUCCCAGUCAUCCCUPUACUCUUACAGUAGCAAAUAAGACCCCUGUCUAAUGGGGGGAGACAAAUGUGUAGACCCUUAGCCACCUUGGCCAGGGCUGACUCCUUAAAUUUCUGGAUGAUGAUGAUUGUUAUUUAAUAGCCAGAGGCUCAUAUAAUUGGCCUCUUUGGAAGAGGCCUCAUGGCCUCCUUACUCUCACCAAAGCAAUUUUUCCCUCAGGGGGGCUCCCAUCUUCUUACACAGAGAGGCAGCUGAGGCAGGACAGUGGGGCUAЖCUGUAGЖCCAGGCGAGGGCACGGGCUGCUGGGGUGGCCCUGCUUCCCCAGUGUACЖUAUUGUAUCUGUGUAACAUUUUGUAUAUUCCAGGGGUAGGGCCGCCCCCUGUAUCAUACCUAGCAGAGGUUGGAGCUGGCACAUGGGGAGGAGGUUCUAAUAAUUAUUUGGGGCUGGGAAACUUAUUUAUUGAUAGCAUAGGACAGAGGAAGGЖGGCGGGGAUGGGGUCGUGGCGC
Sequence (SHORT NAMES ENCODING) GGGGCAGGUCGCUGCCGAUAUAUGACUCCAUUAUUUUGGUUCCAGAGCCGCUUUAUGGAGCUCAUGCAGGAGAAGGCAGACCUGAAGGAGAGGGUAGAGGAACUGGAACAUCGCUGCAUCCAGCUUUCUGGAGAGACAGACACCAUUGGAGAGUACAUUGCACUGUACCAGAGCCAGAGGGCAGUGCUGAAGGAGCGGCACCGGGAGAAGGAGGAGUACAUCAGCAGGCUGGCCCAAGACAAGGAGGAGAUGAAGGUGAAGCUGCUGGAGCUGCAGGAGCUGGUCUUACGGCUUGUGGGCGACCGCAACGAGUGGCAUGGCAGAUUCCUGGCAGCUGCCCAGAACCCUGCUGAUGAGCCCACUUCAGGGGCCCCAGCCCCCCAGGAACUUGGGGCUGCCAACCAGCAGGGUGAUCUUUGCGAGGUGAGCCUCGCCGGCAGUGUGGAGCCUGCCCAAGGAGAGGCCAGGGAGGGUUCUCCCCGUGACAACCCCACUGCACAGCAGAUCAUGCAGCUGCUUCGUGAGAUGCAGAACCCCCGGGAGCGCCCAGGCUUGGGCAGCAACCCCUGCAUUCCUUUUUUUUACCGGGCUGACGAGAAUGAUGAGGUGAAGAUCACUGUCAUCUAAAAGCCGGCUACUGUCAGCAAAGCCUGAAGAAGUGGGGCUGGAUACCCUGCCCCCACCAUAUCCCUACCAUCCCUUCUCAGUCAACCCUUUACCCUUACAGUAGCAAGCAUAGACCCCUGUCUAACGGGGGUAGACAGGUGCAGAUGAGGUGAAGAUCACUGUCAUCUAAAAGCUGGCCACUAAAUUAAAAAAAAAUUAAAAGUUAUGGGAUUAAAAAAAGUUAUGGGAUAAAAAAGGUUAUGGGUAACUUAUGGUAUAAAAGUUAUGAAAAAAGGCCAGGUGCAGUGGCUCACGCCUGUAAUCCCAGCACUUUUGGGAGGCUGAGGUUGGGAGUUCAAGACCAGCCUGGUCAACAUGGUGAAACUGUGUCUCUACUAAAAAUACAAAAAUUAGCCAGGCAUGGUGGCACGUGCCUGUAAUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCUGGGAGGUGGAGGUUGCAGUGGGCUGAGAUCACGCCAUUGCACUCCAGCCUGGGCGACAGAGUGAGACUCUGUCUCAAAAAAAAAAAAAAUUAUGAAAAAAGUUAUGGGAUUAAAGAAAGUCAGGAUAAAAAUUUUAAAAAGCAGGCCACUGUCAGCAAAGCCUGGAGAAGUGGGGCCGGAGGCUCCGCCCCCAUCAUGUGCCUGCCACCCCUUCCCAGUCAUCCCUYUACUCUUACAGUAGCAAAUAAGACCCCUGUCUAAUGGGGGGAGACAAAUGUGUAGACCCUUAGCCACCUUGGCCAGGGCUGACUCCUUAAAUUUCUGGAUGAUGAUGAUUGUUAUUUAAUAGCCAGAGGCUCAUAUAAUUGGCCUCUUUGGAAGAGGCCUCAUGGCCUCCUUACUCUCACCAAAGCAAUUUUUCCCUCAGGGGGGCUCCCAUCUUCUUACACAGAGAGGCAGCUGAGGCAGGACAGUGGGGCUAm6ACUGUAGm6ACCAGGCGAGGGCACGGGCUGCUGGGGUGGCCCUGCUUCCCCAGUGUACm6AUAUUGUAUCUGUGUAACAUUUUGUAUAUUCCAGGGGUAGGGCCGCCCCCUGUAUCAUACCUAGCAGAGGUUGGAGCUGGCACAUGGGGAGGAGGUUCUAAUAAUUAUUUGGGGCUGGGAAACUUAUUUAUUGAUAGCAUAGGACAGAGGAAGGm6AGGCGGGGAUGGGGUCGUGGCGC
Sequence (MODOMICS CODE ENCODING) GGGGCAGGUCGCUGCCGAUAUAUGACUCCAUUAUUUUGGUUCCAGAGCCGCUUUAUGGAGCUCAUGCAGGAGAAGGCAGACCUGAAGGAGAGGGUAGAGGAACUGGAACAUCGCUGCAUCCAGCUUUCUGGAGAGACAGACACCAUUGGAGAGUACAUUGCACUGUACCAGAGCCAGAGGGCAGUGCUGAAGGAGCGGCACCGGGAGAAGGAGGAGUACAUCAGCAGGCUGGCCCAAGACAAGGAGGAGAUGAAGGUGAAGCUGCUGGAGCUGCAGGAGCUGGUCUUACGGCUUGUGGGCGACCGCAACGAGUGGCAUGGCAGAUUCCUGGCAGCUGCCCAGAACCCUGCUGAUGAGCCCACUUCAGGGGCCCCAGCCCCCCAGGAACUUGGGGCUGCCAACCAGCAGGGUGAUCUUUGCGAGGUGAGCCUCGCCGGCAGUGUGGAGCCUGCCCAAGGAGAGGCCAGGGAGGGUUCUCCCCGUGACAACCCCACUGCACAGCAGAUCAUGCAGCUGCUUCGUGAGAUGCAGAACCCCCGGGAGCGCCCAGGCUUGGGCAGCAACCCCUGCAUUCCUUUUUUUUACCGGGCUGACGAGAAUGAUGAGGUGAAGAUCACUGUCAUCUAAAAGCCGGCUACUGUCAGCAAAGCCUGAAGAAGUGGGGCUGGAUACCCUGCCCCCACCAUAUCCCUACCAUCCCUUCUCAGUCAACCCUUUACCCUUACAGUAGCAAGCAUAGACCCCUGUCUAACGGGGGUAGACAGGUGCAGAUGAGGUGAAGAUCACUGUCAUCUAAAAGCUGGCCACUAAAUUAAAAAAAAAUUAAAAGUUAUGGGAUUAAAAAAAGUUAUGGGAUAAAAAAGGUUAUGGGUAACUUAUGGUAUAAAAGUUAUGAAAAAAGGCCAGGUGCAGUGGCUCACGCCUGUAAUCCCAGCACUUUUGGGAGGCUGAGGUUGGGAGUUCAAGACCAGCCUGGUCAACAUGGUGAAACUGUGUCUCUACUAAAAAUACAAAAAUUAGCCAGGCAUGGUGGCACGUGCCUGUAAUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUCGCUUGAACCUGGGAGGUGGAGGUUGCAGUGGGCUGAGAUCACGCCAUUGCACUCCAGCCUGGGCGACAGAGUGAGACUCUGUCUCAAAAAAAAAAAAAAUUAUGAAAAAAGUUAUGGGAUUAAAGAAAGUCAGGAUAAAAAUUUUAAAAAGCAGGCCACUGUCAGCAAAGCCUGGAGAAGUGGGGCCGGAGGCUCCGCCCCCAUCAUGUGCCUGCCACCCCUUCCCAGUCAUCCCU2000000009UUACUCUUACAGUAGCAAAUAAGACCCCUGUCUAAUGGGGGGAGACAAAUGUGUAGACCCUUAGCCACCUUGGCCAGGGCUGACUCCUUAAAUUUCUGGAUGAUGAUGAUUGUUAUUUAAUAGCCAGAGGCUCAUAUAAUUGGCCUCUUUGGAAGAGGCCUCAUGGCCUCCUUACUCUCACCAAAGCAAUUUUUCCCUCAGGGGGGCUCCCAUCUUCUUACACAGAGAGGCAGCUGAGGCAGGACAGUGGGGCUA2000000006ACUGUAG2000000006ACCAGGCGAGGGCACGGGCUGCUGGGGUGGCCCUGCUUCCCCAGUGUAC2000000006AUAUUGUAUCUGUGUAACAUUUUGUAUAUUCCAGGGGUAGGGCCGCCCCCUGUAUCAUACCUAGCAGAGGUUGGAGCUGGCACAUGGGGAGGAGGUUCUAAUAAUUAUUUGGGGCUGGGAAACUUAUUUAUUGAUAGCAUAGGACAGAGGAAGG2000000006AGGCGGGGAUGGGGUCGUGGCGC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1317 1572 1579 1628 1782
Modification Positions Y m6A m6A m6A m6A
Genomic Coordinates 9:128256377:- 9:128256122:- 9:128256115:- 9:128256066:- 9:128255912:-
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
a7o5Kmjr4Tdp
Yfn77uLS5tv8
3kRDPWwiRCgi
L6w2k2VEv4EY
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML