General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000485934
Gene ID:	ENSG00000119431
Gene Name:	HDHD3
Sequence (UNICHARACTER ENCODING)	GUGGGUCCUGGGCCCAGGAACCGGCCCGGAGCCGUGGACGCCCUACAGCUGAGAAGGGGACCCAAGGGGUCGGCCGCGGCCAAGGCCCCUAGGACCGCCGCCCCAGCUCACGCUGCCGACGGCAGCUAUAGACAUUCUGCGUCAGGUCCGGGCUCCUGGACUUCGCCUUUCCCGAGCCCUGGAGGUGGGGAGAAAAGUGGAAGAACUGGCCAGAGAGUCUGGAAGUUUGGGUUCUGGUCCUGGCUGUGCCACUGACUCACUGUGACCUUGGGAUCUUGUGCUGUGAAGЖCAUUUCCCAAGUGCUUCAUGUUAGCCAGCAAAUCUGACCCACAAGGCCUGGAAAGAGGUGAUUGUUAGGUUGCGCAGAGGUGGUCUUAUCCAGCUCAGCUUCCCCUGGGACCCACCGUGGGACCUGAGGCAGAЖCUGGGGUGGЖCUUGGCCUCCUCCAUGGCACACCGGCUGCAGAUACGACUGCUGACGUGGGAUGUGAAGGЖCACGCUGCUCAGGCUCCGCCACCCCUUAGGGGAGGCCUAUGCCACCAAGGCCCGGGCCCAUGGGCUGGAGGUGGAGCCCUCAGCCCUGGAACAAGGCUUCAGGCAGGCAUACAGGGCUCAGAGCCACAGCUUCCCCAACUACGGCCUGAGCCACGGCCUAACCUCCCGCCAGUGGUGGCUGGAUGUGGUCCUGCAGACCUUCCACCUGGCGGGUGUCCAGGAUGCUCAGGCUGUAGCCCCCAUCGCUGAЖCAGCUPUAUAAAGЖCUUCAGCCACCCCUGCACCUGGCAGGUGUUGGAUGGGGCUGAGGЖCACCCUGAGGGAGUGCCGCACACGGGGUCUGAGЖCUGGCAGUGAUCUCCAACUUUGACCGACGGCUAGAGGGCAPCCUGGGGGGCCUUGGCCUGCGUGAЖCACUUCGACUU
Sequence (SHORT NAMES ENCODING)	GUGGGUCCUGGGCCCAGGAACCGGCCCGGAGCCGUGGACGCCCUACAGCUGAGAAGGGGACCCAAGGGGUCGGCCGCGGCCAAGGCCCCUAGGACCGCCGCCCCAGCUCACGCUGCCGACGGCAGCUAUAGACAUUCUGCGUCAGGUCCGGGCUCCUGGACUUCGCCUUUCCCGAGCCCUGGAGGUGGGGAGAAAAGUGGAAGAACUGGCCAGAGAGUCUGGAAGUUUGGGUUCUGGUCCUGGCUGUGCCACUGACUCACUGUGACCUUGGGAUCUUGUGCUGUGAAGm6ACAUUUCCCAAGUGCUUCAUGUUAGCCAGCAAAUCUGACCCACAAGGCCUGGAAAGAGGUGAUUGUUAGGUUGCGCAGAGGUGGUCUUAUCCAGCUCAGCUUCCCCUGGGACCCACCGUGGGACCUGAGGCAGAm6ACUGGGGUGGm6ACUUGGCCUCCUCCAUGGCACACCGGCUGCAGAUACGACUGCUGACGUGGGAUGUGAAGGm6ACACGCUGCUCAGGCUCCGCCACCCCUUAGGGGAGGCCUAUGCCACCAAGGCCCGGGCCCAUGGGCUGGAGGUGGAGCCCUCAGCCCUGGAACAAGGCUUCAGGCAGGCAUACAGGGCUCAGAGCCACAGCUUCCCCAACUACGGCCUGAGCCACGGCCUAACCUCCCGCCAGUGGUGGCUGGAUGUGGUCCUGCAGACCUUCCACCUGGCGGGUGUCCAGGAUGCUCAGGCUGUAGCCCCCAUCGCUGAm6ACAGCUYUAUAAAGm6ACUUCAGCCACCCCUGCACCUGGCAGGUGUUGGAUGGGGCUGAGGm6ACACCCUGAGGGAGUGCCGCACACGGGGUCUGAGm6ACUGGCAGUGAUCUCCAACUUUGACCGACGGCUAGAGGGCAYCCUGGGGGGCCUUGGCCUGCGUGAm6ACACUUCGACUU
Sequence (MODOMICS CODE ENCODING)	GUGGGUCCUGGGCCCAGGAACCGGCCCGGAGCCGUGGACGCCCUACAGCUGAGAAGGGGACCCAAGGGGUCGGCCGCGGCCAAGGCCCCUAGGACCGCCGCCCCAGCUCACGCUGCCGACGGCAGCUAUAGACAUUCUGCGUCAGGUCCGGGCUCCUGGACUUCGCCUUUCCCGAGCCCUGGAGGUGGGGAGAAAAGUGGAAGAACUGGCCAGAGAGUCUGGAAGUUUGGGUUCUGGUCCUGGCUGUGCCACUGACUCACUGUGACCUUGGGAUCUUGUGCUGUGAAG2000000006ACAUUUCCCAAGUGCUUCAUGUUAGCCAGCAAAUCUGACCCACAAGGCCUGGAAAGAGGUGAUUGUUAGGUUGCGCAGAGGUGGUCUUAUCCAGCUCAGCUUCCCCUGGGACCCACCGUGGGACCUGAGGCAGA2000000006ACUGGGGUGG2000000006ACUUGGCCUCCUCCAUGGCACACCGGCUGCAGAUACGACUGCUGACGUGGGAUGUGAAGG2000000006ACACGCUGCUCAGGCUCCGCCACCCCUUAGGGGAGGCCUAUGCCACCAAGGCCCGGGCCCAUGGGCUGGAGGUGGAGCCCUCAGCCCUGGAACAAGGCUUCAGGCAGGCAUACAGGGCUCAGAGCCACAGCUUCCCCAACUACGGCCUGAGCCACGGCCUAACCUCCCGCCAGUGGUGGCUGGAUGUGGUCCUGCAGACCUUCCACCUGGCGGGUGUCCAGGAUGCUCAGGCUGUAGCCCCCAUCGCUGA2000000006ACAGCU2000000009UUAUAAAG2000000006ACUUCAGCCACCCCUGCACCUGGCAGGUGUUGGAUGGGGCUGAGG2000000006ACACCCUGAGGGAGUGCCGCACACGGGGUCUGAG2000000006ACUGGCAGUGAUCUCCAACUUUGACCGACGGCUAGAGGGCA2000000009UCCUGGGGGGCCUUGGCCUGCGUGA2000000006ACACUUCGACUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	289	423	433	493	743	749	757	802	836	877	902
Modification Positions	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A	Y	m6A
Genomic Coordinates	9:113374512:-	9:113374378:-	9:113374368:-	9:113374308:-	9:113374058:-	9:113374052:-	9:113374044:-	9:113373999:-	9:113373965:-	9:113373924:-	9:113373899:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	8cMbzB4aD5Se nfCHyrYzE6fB WiQcrNTGZHPT BtsJQJ3DteUq iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn nfCHyrYzE6fB BtsJQJ3DteUq iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9 834aFpha8RvT ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KTLz8piFYdwC Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8