Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000453748
Gene ID: ENSG00000132780
Gene Name: NASP
Sequence (UNICHARACTER ENCODING) ЖAUCUGCCAUUUUCUGUCCCUGAGUGAGUCUCUGGCGUCCCAAAUUGCCUGUUUUUCUCGCAGGCUCUAUUCCGUUCGCUGGUUCGCCACCUCAGGGGAACGAUGGCCAUGGAGUCCACAGCCACUGCCGCCGUCGCCGCGGAGCUGGUUUCUGCCGACAAAAUUGAAGAUGUUCCUGCUCCUUCUACAUCUGCAGAUAAAGUGGAGAGCAACCAUUAAUCUGCUUUCUGUCACUGAAGAUGGGUUGCAUUUUGUAGAAUAUUAUCUAAAUAGAAUCAUACAUCUGGAUGUGGAUAGUGAAGCUAAGAAACUAUUGGGUUUAGGACAGAAACAUCUGGUGAUGGGGGAUAUUCCAGCAGCUGUCAAUGCAUUCCAGGAAGCAGCUAGUCUUUUAGGUAAGAAGUAUGGAGAGACAGCUAAUGAGUGUGGAGAAGCCUUCUUUUUCUAUGGGAAAUCACUUCUGGAGUUGGCAAGAAUGGAGAAUGGUGUGUUGGGAAACGCCUUGGAAGGUGUGCAUGUGGAAGAGGAAGAAGGAGAAAAAACAGAAGAUGAAUCUCUGGUAGAAAAUAAUGAUAACAUAGAUGAGGAAGCAAGGGAAGAGUUGAGAGAACAGGUUUAUGACGCCAUGGGAGAAAAAGAAGAAGCCAAAAAAACAGAAGACAAGUCUUUGGCAAAGCCUGAAACUGAUAAAGAACAGGЖCAGUGAAAUGGAGAAGGGUGGAAGAGAAGAUAUGGAUAUAAGUAAAUCUGCAGAGGAGCCACAGGAAAAAGUUGACUUGACUCUAGAUUGGUUAACUGAAACCUCUGAAGAGGCAAAAGGAGGAGCAGCACCAGAAGGACCGAAUGAAGCUGAGGUCACUUCUGGGAAGCCAGAACAGGAAGUACCAGAUGCUGAGGAAGAAAAAUCAGUUUCUGGAACUGAUGUCCAAGAAGAGUGCAGAGAAAAAGGAGGUCAGGAGAAGCAGGGAGAGGUAAUUGUGAGCAUAGAGGAGAAGCCAAAAGAAGUUUCAGAAGAGCAGCCUGUGGUGACUCUAGAAAAGCAGGGCACUGCAGUGGAGGUAGAAGCAGAGUCUPUAGЖCCCGACAGUCAAGCCAGUGGAUGUGGGUGGGGACGAGCCAGAGGAGAAGGUAGUUACCUCUGAAAACGAGGCAGGAAAGGCGGUUCUUGAЖCAACUGGUAGGUCAAGAAGUACCACCUGCUGAAGAGUCACCAGAGGUGACAACAGAGGCUGCAGAGGCCUCAGCUGUAGAGGCUGGAUCAGAAGUCUCUGAAAAGCCUGGGCAGGAGGCUCCAGUUCUCCCUAAGGAUGGUGCAGUCAAUGGЖCCGUCAGUUGUAGGAGAUCAGACUCCUAUUGAЖCCACAGЖCUUCUAUAGAAAGЖCUGACAGAAACAAAAGAUGGCUCAGGACUAGAGGAGAAGGUCAGGGCAAAGCUGGUUCCUAGUCAGGAGGAGACUAAGCUGUCUGUAGAAGAGUCUGAGGCAGCUGGAGAUGGGGUUGAUACCAAGGUAGCCCAGGGAGCUACUGAGAAAUCACCUGAAGACAAAGUUCAGAUAGCUGCUAAUGAAGAGACACAAGAGAGAGAAGAACAGAUGAAAGAGGGUGAAGAAЖCUGAAGGCUCAGAAGAGGAUGAUAAAGAAAAUGAUAAGACCGAAGAAAUGCCAAAUGAUUCAGUCCUUGAAAACAAGUCUCUUCAAGAAAAUGAGGAGGAGGAGAUUGGGAACCUAGAGCUUGCCUGGGAUAUGCUGGAUUUAGCAAAGAUCAUUUUUAAAAGGCAAGAAACAAAAGAAGCACAGCUPUAUGCUGCCCAGGCACAUCUUAAЖCUCGGAGAAGUUAGUGUUGAAUCUGAAAACUAUGUGCAAGCUGUGGAGGAGUUCCAGUCCUGCCUUAACCUGCAGGAЖCAGUACCUGGAAGCCCACGACCGUCUCCUUGCAGAGЖCCCACUACCAGCUGGGCUUGGCUUAUGGGUACAACUCUCAGUAUGAUGAGGCAGUGGCACAGUUCAGCAAAUCUAUUGAAGUCAUUGAGAACAGAAUGGCUGUACUAAACGAGCAGGUGAAGGAGGCUGAAGGAUCGUCUGCUGAAUAC
Sequence (SHORT NAMES ENCODING) m6AAUCUGCCAUUUUCUGUCCCUGAGUGAGUCUCUGGCGUCCCAAAUUGCCUGUUUUUCUCGCAGGCUCUAUUCCGUUCGCUGGUUCGCCACCUCAGGGGAACGAUGGCCAUGGAGUCCACAGCCACUGCCGCCGUCGCCGCGGAGCUGGUUUCUGCCGACAAAAUUGAAGAUGUUCCUGCUCCUUCUACAUCUGCAGAUAAAGUGGAGAGCAACCAUUAAUCUGCUUUCUGUCACUGAAGAUGGGUUGCAUUUUGUAGAAUAUUAUCUAAAUAGAAUCAUACAUCUGGAUGUGGAUAGUGAAGCUAAGAAACUAUUGGGUUUAGGACAGAAACAUCUGGUGAUGGGGGAUAUUCCAGCAGCUGUCAAUGCAUUCCAGGAAGCAGCUAGUCUUUUAGGUAAGAAGUAUGGAGAGACAGCUAAUGAGUGUGGAGAAGCCUUCUUUUUCUAUGGGAAAUCACUUCUGGAGUUGGCAAGAAUGGAGAAUGGUGUGUUGGGAAACGCCUUGGAAGGUGUGCAUGUGGAAGAGGAAGAAGGAGAAAAAACAGAAGAUGAAUCUCUGGUAGAAAAUAAUGAUAACAUAGAUGAGGAAGCAAGGGAAGAGUUGAGAGAACAGGUUUAUGACGCCAUGGGAGAAAAAGAAGAAGCCAAAAAAACAGAAGACAAGUCUUUGGCAAAGCCUGAAACUGAUAAAGAACAGGm6ACAGUGAAAUGGAGAAGGGUGGAAGAGAAGAUAUGGAUAUAAGUAAAUCUGCAGAGGAGCCACAGGAAAAAGUUGACUUGACUCUAGAUUGGUUAACUGAAACCUCUGAAGAGGCAAAAGGAGGAGCAGCACCAGAAGGACCGAAUGAAGCUGAGGUCACUUCUGGGAAGCCAGAACAGGAAGUACCAGAUGCUGAGGAAGAAAAAUCAGUUUCUGGAACUGAUGUCCAAGAAGAGUGCAGAGAAAAAGGAGGUCAGGAGAAGCAGGGAGAGGUAAUUGUGAGCAUAGAGGAGAAGCCAAAAGAAGUUUCAGAAGAGCAGCCUGUGGUGACUCUAGAAAAGCAGGGCACUGCAGUGGAGGUAGAAGCAGAGUCUYUAGm6ACCCGACAGUCAAGCCAGUGGAUGUGGGUGGGGACGAGCCAGAGGAGAAGGUAGUUACCUCUGAAAACGAGGCAGGAAAGGCGGUUCUUGAm6ACAACUGGUAGGUCAAGAAGUACCACCUGCUGAAGAGUCACCAGAGGUGACAACAGAGGCUGCAGAGGCCUCAGCUGUAGAGGCUGGAUCAGAAGUCUCUGAAAAGCCUGGGCAGGAGGCUCCAGUUCUCCCUAAGGAUGGUGCAGUCAAUGGm6ACCGUCAGUUGUAGGAGAUCAGACUCCUAUUGAm6ACCACAGm6ACUUCUAUAGAAAGm6ACUGACAGAAACAAAAGAUGGCUCAGGACUAGAGGAGAAGGUCAGGGCAAAGCUGGUUCCUAGUCAGGAGGAGACUAAGCUGUCUGUAGAAGAGUCUGAGGCAGCUGGAGAUGGGGUUGAUACCAAGGUAGCCCAGGGAGCUACUGAGAAAUCACCUGAAGACAAAGUUCAGAUAGCUGCUAAUGAAGAGACACAAGAGAGAGAAGAACAGAUGAAAGAGGGUGAAGAAm6ACUGAAGGCUCAGAAGAGGAUGAUAAAGAAAAUGAUAAGACCGAAGAAAUGCCAAAUGAUUCAGUCCUUGAAAACAAGUCUCUUCAAGAAAAUGAGGAGGAGGAGAUUGGGAACCUAGAGCUUGCCUGGGAUAUGCUGGAUUUAGCAAAGAUCAUUUUUAAAAGGCAAGAAACAAAAGAAGCACAGCUYUAUGCUGCCCAGGCACAUCUUAAm6ACUCGGAGAAGUUAGUGUUGAAUCUGAAAACUAUGUGCAAGCUGUGGAGGAGUUCCAGUCCUGCCUUAACCUGCAGGAm6ACAGUACCUGGAAGCCCACGACCGUCUCCUUGCAGAGm6ACCCACUACCAGCUGGGCUUGGCUUAUGGGUACAACUCUCAGUAUGAUGAGGCAGUGGCACAGUUCAGCAAAUCUAUUGAAGUCAUUGAGAACAGAAUGGCUGUACUAAACGAGCAGGUGAAGGAGGCUGAAGGAUCGUCUGCUGAAUAC
Sequence (MODOMICS CODE ENCODING) 2000000006AAUCUGCCAUUUUCUGUCCCUGAGUGAGUCUCUGGCGUCCCAAAUUGCCUGUUUUUCUCGCAGGCUCUAUUCCGUUCGCUGGUUCGCCACCUCAGGGGAACGAUGGCCAUGGAGUCCACAGCCACUGCCGCCGUCGCCGCGGAGCUGGUUUCUGCCGACAAAAUUGAAGAUGUUCCUGCUCCUUCUACAUCUGCAGAUAAAGUGGAGAGCAACCAUUAAUCUGCUUUCUGUCACUGAAGAUGGGUUGCAUUUUGUAGAAUAUUAUCUAAAUAGAAUCAUACAUCUGGAUGUGGAUAGUGAAGCUAAGAAACUAUUGGGUUUAGGACAGAAACAUCUGGUGAUGGGGGAUAUUCCAGCAGCUGUCAAUGCAUUCCAGGAAGCAGCUAGUCUUUUAGGUAAGAAGUAUGGAGAGACAGCUAAUGAGUGUGGAGAAGCCUUCUUUUUCUAUGGGAAAUCACUUCUGGAGUUGGCAAGAAUGGAGAAUGGUGUGUUGGGAAACGCCUUGGAAGGUGUGCAUGUGGAAGAGGAAGAAGGAGAAAAAACAGAAGAUGAAUCUCUGGUAGAAAAUAAUGAUAACAUAGAUGAGGAAGCAAGGGAAGAGUUGAGAGAACAGGUUUAUGACGCCAUGGGAGAAAAAGAAGAAGCCAAAAAAACAGAAGACAAGUCUUUGGCAAAGCCUGAAACUGAUAAAGAACAGG2000000006ACAGUGAAAUGGAGAAGGGUGGAAGAGAAGAUAUGGAUAUAAGUAAAUCUGCAGAGGAGCCACAGGAAAAAGUUGACUUGACUCUAGAUUGGUUAACUGAAACCUCUGAAGAGGCAAAAGGAGGAGCAGCACCAGAAGGACCGAAUGAAGCUGAGGUCACUUCUGGGAAGCCAGAACAGGAAGUACCAGAUGCUGAGGAAGAAAAAUCAGUUUCUGGAACUGAUGUCCAAGAAGAGUGCAGAGAAAAAGGAGGUCAGGAGAAGCAGGGAGAGGUAAUUGUGAGCAUAGAGGAGAAGCCAAAAGAAGUUUCAGAAGAGCAGCCUGUGGUGACUCUAGAAAAGCAGGGCACUGCAGUGGAGGUAGAAGCAGAGUCU2000000009UUAG2000000006ACCCGACAGUCAAGCCAGUGGAUGUGGGUGGGGACGAGCCAGAGGAGAAGGUAGUUACCUCUGAAAACGAGGCAGGAAAGGCGGUUCUUGA2000000006ACAACUGGUAGGUCAAGAAGUACCACCUGCUGAAGAGUCACCAGAGGUGACAACAGAGGCUGCAGAGGCCUCAGCUGUAGAGGCUGGAUCAGAAGUCUCUGAAAAGCCUGGGCAGGAGGCUCCAGUUCUCCCUAAGGAUGGUGCAGUCAAUGG2000000006ACCGUCAGUUGUAGGAGAUCAGACUCCUAUUGA2000000006ACCACAG2000000006ACUUCUAUAGAAAG2000000006ACUGACAGAAACAAAAGAUGGCUCAGGACUAGAGGAGAAGGUCAGGGCAAAGCUGGUUCCUAGUCAGGAGGAGACUAAGCUGUCUGUAGAAGAGUCUGAGGCAGCUGGAGAUGGGGUUGAUACCAAGGUAGCCCAGGGAGCUACUGAGAAAUCACCUGAAGACAAAGUUCAGAUAGCUGCUAAUGAAGAGACACAAGAGAGAGAAGAACAGAUGAAAGAGGGUGAAGAA2000000006ACUGAAGGCUCAGAAGAGGAUGAUAAAGAAAAUGAUAAGACCGAAGAAAUGCCAAAUGAUUCAGUCCUUGAAAACAAGUCUCUUCAAGAAAAUGAGGAGGAGGAGAUUGGGAACCUAGAGCUUGCCUGGGAUAUGCUGGAUUUAGCAAAGAUCAUUUUUAAAAGGCAAGAAACAAAAGAAGCACAGCU2000000009UUAUGCUGCCCAGGCACAUCUUAA2000000006ACUCGGAGAAGUUAGUGUUGAAUCUGAAAACUAUGUGCAAGCUGUGGAGGAGUUCCAGUCCUGCCUUAACCUGCAGGA2000000006ACAGUACCUGGAAGCCCACGACCGUCUCCUUGCAGAG2000000006ACCCACUACCAGCUGGGCUUGGCUUAUGGGUACAACUCUCAGUAUGAUGAGGCAGUGGCACAGUUCAGCAAAUCUAUUGAAGUCAUUGAGAACAGAAUGGCUGUACUAAACGAGCAGGUGAAGGAGGCUGAAGGAUCGUCUGCUGAAUAC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1 699 1073 1077 1168 1321 1354 1361 1375 1604 1792 1816 1894 1931
Modification Positions m6A m6A Y m6A m6A m6A m6A m6A m6A m6A Y m6A m6A m6A
Genomic Coordinates 1:45584045:+ 1:45607435:+ 1:45607809:+ 1:45607813:+ 1:45607904:+ 1:45608057:+ 1:45608090:+ 1:45608097:+ 1:45608111:+ 1:45613171:+ 1:45614317:+ 1:45614341:+ 1:45615065:+ 1:45615102:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
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KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
msuJfBpJvM5H
VyCX26p5UBRL
BtsJQJ3DteUq
eGNFqdoGxzRm
S9vNeQQYrhac
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BtsJQJ3DteUq
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XWZVGdLC6gGJ
S9vNeQQYrhac
3TeAZFYFxgvp
4HMi5ykupT9V
5aTkEfEpX8Xm
6AyXsheySjfx
6UuHp6YApVKv
Ap2q43bQLNek
gBgcfFQ5WN9C
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
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4HMi5ykupT9V
5aTkEfEpX8Xm
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
Q36pf44ZRvxu
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
BkoLW2CBToyL
nfCHyrYzE6fB
BtsJQJ3DteUq
bXBqJigD9oV3
eGNFqdoGxzRm
XWZVGdLC6gGJ
S9vNeQQYrhac
4HMi5ykupT9V
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
93arJtwJmuS9
nfCHyrYzE6fB
BtsJQJ3DteUq
bXBqJigD9oV3
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XWZVGdLC6gGJ
S9vNeQQYrhac
BtsJQJ3DteUq
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dknfVe6BK8aP
eGNFqdoGxzRm
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XWZVGdLC6gGJ
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S9vNeQQYrhac
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iezFbUdmY3A6
S9vNeQQYrhac
a7o5Kmjr4Tdp
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KTLz8piFYdwC
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f6YSioLdAWpr
kx7BHU7ZycYE
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f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
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XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
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f6YSioLdAWpr
kx7BHU7ZycYE
Mk6ShCGm6RBJ
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XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8