Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000644145
Gene ID: ENSG00000198860
Gene Name: TSEN15
Sequence (UNICHARACTER ENCODING) ACCACGGGAGCGCCGCACCGGCCGGCAUGGAGGAGCGCGGCGAUUCCGAGCCGACCCCCGGCUGCAGCGGCCUGGGUCCGGGCGGUGUUCGCGGCUUUGGCGACGGCGGUGGAGCUCCUUCGUGGGCCCCUGAGGACGCCUGGAUGGGCACUCACCCUAAGAAAUGAUGGAAUUAGAUAUAGGAGAUGCCACCCAAGUUUAUGUAGCGUUCUUGGUUUACCUGGACCUCAUGGAAAGCAAAAGCUGGCAUGAAGUAAACUGUGUAGGAUUACCAGAACUCCAGCUCAUCUGCCUUGUUGGUACUGAGAUAGAAGGGGAGGGGUUACAGACUGUGGUGCCUACCCCCAUCACUGCUUCCCUCAGCCAUAЖCAGGAUAAGGGAGAUCUUGAAGGCAUCUCGAAAGUUGCAAGGUGAUCCAGAUPUGCCGAUGUCUUUUACUUUGGCCAUAGUGGAGUCUGAUUCUACAAUAGUCUAUUAUAAЖCUUACUGAUGGAUUUAUGCUGCCAGACCCUCAGAAUAUUUCUCUUAGAAGAUGACAPCCAUGUUUCCUGAUGCUUGUUUUAUUCAUACAAGAUUGGAUUUGAGЖCCCAUCAGACUGCUUCAUCUUUUAUCUCAGAAAUAGGGUUGACGUACAUAGUGAGGGUUGACUUCCCCAUUCCAUAAGGUUUUCAUUCUGAAGAGUAAAACUUCCCCAGGUAGAAGACUUUCUCCUUCUUAAAAAAUAUAGGGUGAUUUCUPUAAAACUUUGUUAUCUAGAGACAGUUUAAUUACAGUUAUAUACAGGUUUAUGCCUAGGAUGUAUUCAGAUGGGUGGGACCUGUGUGCUGCUUUUGUCAPCCCACACUCAAAGUUGUCUCUUUGUUUCUUGCUGCCACUGCCAGCUCAUUGUUGAGACUGCCAUUUCUUUCUCUUACUCAGCUCUCCCCAGUGCCUUUUGGCCACUGCAGCUACCGUAGAAUGGCAUUUUAUAUGUACCUUGUCACCCACUUCUGUUUACUUUUUCCUCUCCAGUAAAAAGUAAAAGAUUUCUUUCAAUUGGUCUUCCCAUUGCAGUUACUGUUAUUUCUCUUUUUUGGUUAЖCUPUAAAUCAAAACUCAAAAUAUGUUCAPCCAGAGUGUGUCUUAAGUAЖCUUACGUGUCUUAAGUAЖCAGGGACCAGAGACAUGUUACCUACAAGAGUUCUGGGCUAUCCUUUUCAUUCUUAUCACAUAUCAUAGCUUGAAUAUUACAACAGUGUGGGAGAGAAUCAACCGUAAAAAUGUCUUCAUUAAUUAGЖCCCAGUUAUUCCACUUUUGUUAAUGUCUCUCAAAUUGUACAAAGUAUAAAAAAUUAUAUGCACAAAGAUGUUCCAAGUGACAUUACUUUUAGUAGCCCAAAUUAUAAЖCCACUPUAAAGUUUGGGGUAAAGAUUGGCAAACUUUUUCUAUAAAGGGCCAGAAAGUAACUAUUUUAGGUUUUUAAACCUACUGUCUCUGUCAUAЖCUUGUCAACACUGCUGUAUGAAGCACAAAAGCAGCCAUAGACAAUACAUAAЖCAAUACGGGCGUGGCUUUGUUCCAGUAAAACUUUGUUUACAAAUGUGGUGCCAUAGUUUGUCAPCCCUGGGUCUAGGAAAUAGUCAAUAAACAGAUAUAUACAAAUGAUA
Sequence (SHORT NAMES ENCODING) ACCACGGGAGCGCCGCACCGGCCGGCAUGGAGGAGCGCGGCGAUUCCGAGCCGACCCCCGGCUGCAGCGGCCUGGGUCCGGGCGGUGUUCGCGGCUUUGGCGACGGCGGUGGAGCUCCUUCGUGGGCCCCUGAGGACGCCUGGAUGGGCACUCACCCUAAGAAAUGAUGGAAUUAGAUAUAGGAGAUGCCACCCAAGUUUAUGUAGCGUUCUUGGUUUACCUGGACCUCAUGGAAAGCAAAAGCUGGCAUGAAGUAAACUGUGUAGGAUUACCAGAACUCCAGCUCAUCUGCCUUGUUGGUACUGAGAUAGAAGGGGAGGGGUUACAGACUGUGGUGCCUACCCCCAUCACUGCUUCCCUCAGCCAUAm6ACAGGAUAAGGGAGAUCUUGAAGGCAUCUCGAAAGUUGCAAGGUGAUCCAGAUYUGCCGAUGUCUUUUACUUUGGCCAUAGUGGAGUCUGAUUCUACAAUAGUCUAUUAUAAm6ACUUACUGAUGGAUUUAUGCUGCCAGACCCUCAGAAUAUUUCUCUUAGAAGAUGACAYCCAUGUUUCCUGAUGCUUGUUUUAUUCAUACAAGAUUGGAUUUGAGm6ACCCAUCAGACUGCUUCAUCUUUUAUCUCAGAAAUAGGGUUGACGUACAUAGUGAGGGUUGACUUCCCCAUUCCAUAAGGUUUUCAUUCUGAAGAGUAAAACUUCCCCAGGUAGAAGACUUUCUCCUUCUUAAAAAAUAUAGGGUGAUUUCUYUAAAACUUUGUUAUCUAGAGACAGUUUAAUUACAGUUAUAUACAGGUUUAUGCCUAGGAUGUAUUCAGAUGGGUGGGACCUGUGUGCUGCUUUUGUCAYCCCACACUCAAAGUUGUCUCUUUGUUUCUUGCUGCCACUGCCAGCUCAUUGUUGAGACUGCCAUUUCUUUCUCUUACUCAGCUCUCCCCAGUGCCUUUUGGCCACUGCAGCUACCGUAGAAUGGCAUUUUAUAUGUACCUUGUCACCCACUUCUGUUUACUUUUUCCUCUCCAGUAAAAAGUAAAAGAUUUCUUUCAAUUGGUCUUCCCAUUGCAGUUACUGUUAUUUCUCUUUUUUGGUUAm6ACUYUAAAUCAAAACUCAAAAUAUGUUCAYCCAGAGUGUGUCUUAAGUAm6ACUUACGUGUCUUAAGUAm6ACAGGGACCAGAGACAUGUUACCUACAAGAGUUCUGGGCUAUCCUUUUCAUUCUUAUCACAUAUCAUAGCUUGAAUAUUACAACAGUGUGGGAGAGAAUCAACCGUAAAAAUGUCUUCAUUAAUUAGm6ACCCAGUUAUUCCACUUUUGUUAAUGUCUCUCAAAUUGUACAAAGUAUAAAAAAUUAUAUGCACAAAGAUGUUCCAAGUGACAUUACUUUUAGUAGCCCAAAUUAUAAm6ACCACUYUAAAGUUUGGGGUAAAGAUUGGCAAACUUUUUCUAUAAAGGGCCAGAAAGUAACUAUUUUAGGUUUUUAAACCUACUGUCUCUGUCAUAm6ACUUGUCAACACUGCUGUAUGAAGCACAAAAGCAGCCAUAGACAAUACAUAAm6ACAAUACGGGCGUGGCUUUGUUCCAGUAAAACUUUGUUUACAAAUGUGGUGCCAUAGUUUGUCAYCCCUGGGUCUAGGAAAUAGUCAAUAAACAGAUAUAUACAAAUGAUA
Sequence (MODOMICS CODE ENCODING) ACCACGGGAGCGCCGCACCGGCCGGCAUGGAGGAGCGCGGCGAUUCCGAGCCGACCCCCGGCUGCAGCGGCCUGGGUCCGGGCGGUGUUCGCGGCUUUGGCGACGGCGGUGGAGCUCCUUCGUGGGCCCCUGAGGACGCCUGGAUGGGCACUCACCCUAAGAAAUGAUGGAAUUAGAUAUAGGAGAUGCCACCCAAGUUUAUGUAGCGUUCUUGGUUUACCUGGACCUCAUGGAAAGCAAAAGCUGGCAUGAAGUAAACUGUGUAGGAUUACCAGAACUCCAGCUCAUCUGCCUUGUUGGUACUGAGAUAGAAGGGGAGGGGUUACAGACUGUGGUGCCUACCCCCAUCACUGCUUCCCUCAGCCAUA2000000006ACAGGAUAAGGGAGAUCUUGAAGGCAUCUCGAAAGUUGCAAGGUGAUCCAGAU2000000009UUGCCGAUGUCUUUUACUUUGGCCAUAGUGGAGUCUGAUUCUACAAUAGUCUAUUAUAA2000000006ACUUACUGAUGGAUUUAUGCUGCCAGACCCUCAGAAUAUUUCUCUUAGAAGAUGACA2000000009UCCAUGUUUCCUGAUGCUUGUUUUAUUCAUACAAGAUUGGAUUUGAG2000000006ACCCAUCAGACUGCUUCAUCUUUUAUCUCAGAAAUAGGGUUGACGUACAUAGUGAGGGUUGACUUCCCCAUUCCAUAAGGUUUUCAUUCUGAAGAGUAAAACUUCCCCAGGUAGAAGACUUUCUCCUUCUUAAAAAAUAUAGGGUGAUUUCU2000000009UUAAAACUUUGUUAUCUAGAGACAGUUUAAUUACAGUUAUAUACAGGUUUAUGCCUAGGAUGUAUUCAGAUGGGUGGGACCUGUGUGCUGCUUUUGUCA2000000009UCCCACACUCAAAGUUGUCUCUUUGUUUCUUGCUGCCACUGCCAGCUCAUUGUUGAGACUGCCAUUUCUUUCUCUUACUCAGCUCUCCCCAGUGCCUUUUGGCCACUGCAGCUACCGUAGAAUGGCAUUUUAUAUGUACCUUGUCACCCACUUCUGUUUACUUUUUCCUCUCCAGUAAAAAGUAAAAGAUUUCUUUCAAUUGGUCUUCCCAUUGCAGUUACUGUUAUUUCUCUUUUUUGGUUA2000000006ACU2000000009UUAAAUCAAAACUCAAAAUAUGUUCA2000000009UCCAGAGUGUGUCUUAAGUA2000000006ACUUACGUGUCUUAAGUA2000000006ACAGGGACCAGAGACAUGUUACCUACAAGAGUUCUGGGCUAUCCUUUUCAUUCUUAUCACAUAUCAUAGCUUGAAUAUUACAACAGUGUGGGAGAGAAUCAACCGUAAAAAUGUCUUCAUUAAUUAG2000000006ACCCAGUUAUUCCACUUUUGUUAAUGUCUCUCAAAUUGUACAAAGUAUAAAAAAUUAUAUGCACAAAGAUGUUCCAAGUGACAUUACUUUUAGUAGCCCAAAUUAUAA2000000006ACCACU2000000009UUAAAGUUUGGGGUAAAGAUUGGCAAACUUUUUCUAUAAAGGGCCAGAAAGUAACUAUUUUAGGUUUUUAAACCUACUGUCUCUGUCAUA2000000006ACUUGUCAACACUGCUGUAUGAAGCACAAAAGCAGCCAUAGACAAUACAUAA2000000006ACAAUACGGGCGUGGCUUUGUUCCAGUAAAACUUUGUUUACAAAUGUGGUGCCAUAGUUUGUCA2000000009UCCCUGGGUCUAGGAAAUAGUCAAUAAACAGAUAUAUACAAAUGAUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 369 422 481 538 585 737 836 1079 1082 1108 1128 1146 1273 1381 1387 1477 1529 1593
Modification Positions m6A Y m6A Y m6A Y Y m6A Y Y m6A m6A m6A m6A Y m6A m6A Y
Genomic Coordinates 1:184054860:+ 1:184072206:+ 1:184072265:+ 1:184072850:+ 1:184072897:+ 1:184073049:+ 1:184073148:+ 1:184073391:+ 1:184073394:+ 1:184073420:+ 1:184073440:+ 1:184073458:+ 1:184073585:+ 1:184073693:+ 1:184073699:+ 1:184073789:+ 1:184073841:+ 1:184073905:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
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iezFbUdmY3A6
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BtsJQJ3DteUq
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BtsJQJ3DteUq
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BtsJQJ3DteUq
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BtsJQJ3DteUq
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BtsJQJ3DteUq
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