DNAmoreDB - A Database of Deoxyribozymes

DNAzyme description

 Reaction  Reacting groups  Substrates Product  Metal ion  Seq description
DNA phosphorylation Group 1 - ATP

Group 2 - 5'-OH

S: GGAAGAGTGGTGAC-N70-AGCTGATCCTGATGG
5'-self phosphorylated DNA Mn2+
N 70
 Buffer conditions
50 mM HEPES pH 7.0, 400 mM NaCl, 100 mM KCl, 5 mM MgCl2, 5 mM CaCl2, 5 mM MnCl2, 50 μM CuCl2, 1 mM ATP, 1 mM GTP
 kcat/ kobs
kcat = 2.8 min-1
 Catalytic region of the DNAzyme
GTTGGTGATAAAGACCGCGCTAGGGTCTGCAAGGGAGGAGATAGAGTATTTAGGATCGTATGGGCGGTG

 Reported in...

Year of Publication First Author Laboratory Title PubMed ID DOI Reaction
2002 W Wang Y Li Sequence diversity, metal specificity, and catalytic proficiency of metal-dependent phosphorylating DNA enzymes. 11983339 10.1016/S1074-5521(02)00127-8 DNA phosphorylation

 Related Publications

Year of Publication First Author Laboratory Title PubMed ID DOI Reaction
2005 J C Achenbach Y Li Secondary-structure characterization of two proficient kinase deoxyribozymes. 15751953 10.1021/bi0483054 DNA phosphorylation
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